Browse Element(s) Details


Os.18377.3.S1_x_at

Description gb:NM_187265.1
DB_XREF= gi:34901615
GEN=P0571D04.22
TID=Os.18377.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18377 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative TPR-containing nuclear phosphoprotein (P0571D04.22), mRNA.
PROD=putative TPR-containing nuclear phosphoprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2936011/11TPR repeat nuclear phosphoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29330Os.12688.1.S1_at11/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29330OsAffx.16011.1.S1_at3/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29340OsAffx.16471.1.S1_at11/117+17211644..17212974hypothetical protein
LOC_Os07g29350NANA7+17216101..17216455hypothetical protein
LOC_Os07g29360Os.18377.3.S1_x_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29360Os.18377.1.S1_a_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29370OsAffx.22325.1.S1_at10/117+17247907..17248424hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_x_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29390OsAffx.10094.1.A1_x_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390Os.20031.1.S1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390OsAffx.10094.1.A1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29400NANA7+17263837..17264325hypothetical protein
LOC_Os07g29410Os.12100.1.S1_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29410Os.52278.1.S1_s_at11/117+17266971..17268414thioredoxin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0016571biological_processhistone methylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18377.3.S1_x_at--1044--6671Chr07:17231043..17231067 (25 bp)
GTTGCTCGACAAATTGCTTTGGCTG
LOC_Os07g29360
Os.18377.3.S1_x_at--887--10231Chr07:17231026..17231050 (25 bp)
TTTGGCTGATGAAGCTCGCCGCAAG
LOC_Os07g29360
Os.18377.3.S1_x_at--444--5151Chr07:17230852..17230876 (25 bp)
GCAACAGGAGCAACACTTTGAGCGT
LOC_Os07g29360
Os.18377.3.S1_x_at--427--2431Chr07:17229783..17229807 (25 bp)
AAAACCTCAAGTAACACTCCTGGCA
LOC_Os07g29360
Os.18377.3.S1_x_at--316--6291Chr07:17229609..17229633 (25 bp)
GATGATTATGCAAACACGGCGAGGA
LOC_Os07g29360
Os.18377.3.S1_x_at--84--4051Chr07:17229571..17229595 (25 bp)
CGATTCAGAGAAAGCCCCAGGTCAC
LOC_Os07g29360
Os.18377.3.S1_x_at--972--10711Chr07:17229542..17229566 (25 bp)
TTGCTGCTGCAGGTCTTGAAGATTC
LOC_Os07g29360
Os.18377.3.S1_x_at--1055--2731Chr07:17229244..17229533 (25 bp)
AAGAAGATGACATGGGACACCCTCA
LOC_Os07g29360
Os.18377.3.S1_x_at--389--7631Chr07:17229231..17229255 (25 bp)
GGGACACCCTCAATCTGCCATAGAA
LOC_Os07g29360
Os.18377.3.S1_x_at--1020--1351Chr07:17229202..17229226 (25 bp)
AGAGACGAGCCTGGTCAGAATCTGA
LOC_Os07g29360
Os.18377.3.S1_x_at--673--691Chr07:17229172..17229196 (25 bp)
ATGAGCCAGTGCAGAGGCCAGTGCA
LOC_Os07g29360
Target Sequence 
GTTGCTCGACAAATTGCTTTGGCTGATGAAGCTCGCCGCAAGGCTGAAGAACAGAGGAAGGCCCAGTTAGAAAGAAGGAA
GCAAGAGGACGAGCTAAAGCAAGTAATGCAACAGGAGCAACACTTTGAGCGTGTCAAGGAGCAATGGAAAACCTCAAGTA
ACACTCCTGGCAAGAGAAAAGATAGGTCTAAGCATGAAGATGAAGAGGGGGGAGGTGAAAAGAGGAGGAAGAAGGGTGGT
AGGAGAAGGAAGGATCAGAAGACAAAGGCACACTATGGGGAAGAGGAAGAAGACGAATATAGAGATGAACCAGAAGCAGA
AGATGATTATGCAAACACGGCGAGGAGTAACGATGGTGGCGATTCAGAGAAAGCCCCAGGTCACCTTCTTGCTGCTGCAG
GTCTTGAAGATTCTGATGCTGAAGAAGATGACATGGGACACCCTCAATCTGCCATAGAACGGAAGAGACGAGCCTGGTCA
GAATCTGAGGATGATGAGCCAGTGCAGAGGCCAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18377.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis