Browse Element(s) Details


Os.12688.1.S1_at

Description gb:AK066198.1
DB_XREF= gi:32976216
TID=Os.12688.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0571D04.18 (P0571D04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056N03, full insert sequence.
FL= gb:AK066198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2933011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29300OsAffx.22328.1.S1_at11/117+17170999..17171888hypothetical protein
LOC_Os07g29310Os.37213.1.S1_at11/117+17184979..17185946Auxin responsive protein, expressed
LOC_Os07g29320Os.19948.1.S1_at10/117+17193629..17195283Eukaryotic rRNA processing protein EBP2 containing protein, expressed
LOC_Os07g29330Os.12688.1.S1_at11/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29330OsAffx.16011.1.S1_at3/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29340OsAffx.16471.1.S1_at11/117+17211644..17212974hypothetical protein
LOC_Os07g29350NANA7+17216101..17216455hypothetical protein
LOC_Os07g29360Os.18377.3.S1_x_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29360Os.18377.1.S1_a_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12688.1.S1_at--688--6211Chr07:17197151..17197174 (24 bp)
GAGGCTGTTCGAAGTTCTGGACATC
LOC_Os07g29330
Os.12688.1.S1_at--407--5631Chr07:17197120..17197144 (25 bp)
GACACTCAGGTCGATCTTATTCCAG
LOC_Os07g29330
Os.12688.1.S1_at--406--10211Chr07:17197103..17197127 (25 bp)
TATTCCAGGCAGAGACGAAGCGGTT
LOC_Os07g29330
Os.12688.1.S1_at--1136--4671Chr07:17197084..17197108 (25 bp)
GCGGTTGATGCAGCAATTTTCCTTT
LOC_Os07g29330
Os.12688.1.S1_at--396--5011Chr07:17197014..17197038 (25 bp)
GCAGGTTTTGTTTAGCGTTCCACAC
LOC_Os07g29330
Os.12688.1.S1_at--594--2171Chr07:17196993..17197017 (25 bp)
ACACCCTCCCTTTTGTTATGGTCAT
LOC_Os07g29330
Os.12688.1.S1_at--927--3911Chr07:17196963..17196987 (25 bp)
CGGCGAGCAATTTTTACTTGGTTGT
LOC_Os07g29330
Os.12688.1.S1_at--280--9891Chr07:17196949..17196973 (25 bp)
TACTTGGTTGTATCTCAGCGGTAAC
LOC_Os07g29330
Os.12688.1.S1_at--360--6891Chr07:17196940..17196964 (25 bp)
GTATCTCAGCGGTAACGTTGGAATA
LOC_Os07g29330
Os.12688.1.S1_at--1000--6531Chr07:17196856..17196880 (25 bp)
GATTATAATCCTTTCAGTTCAACCA
LOC_Os07g29330
Os.12688.1.S1_at--985--9711Chr07:17196838..17196862 (25 bp)
TCAACCACGAGATGTCATGACTTCT
LOC_Os07g29330
Target Sequence 
GAGGCTGTTCGAAGTTCTGGACATCAGAAGAGACACTCAGGTCGATCTTATTCCAGGCAGAGACGAAGCGGTTGATGCAG
CAATTTTCCTTTTTTTTTAAAAAAAAAANTCTTGTTTCGGTTTAGTTTCTGAAATGCGGCAGGTTTTGTTTAGCGTTCCA
CACCCTCCCTTTTGTTATGGTCATTTCCNCGGCGAGCAATTTTTACTTGGTTGTATCTCAGCGGTAACGTTGGAATATAA
TCTGGTGAGTTTCTTGTATTTTTTTTTNCATGTCGTGAGCTGGTGTAAACGATTGTTGATTATAATCCTTTCAGTTCAAC
CACGAGATGTCATGACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis