Browse Element(s) Details


Os.19948.1.S1_at

Description gb:AK071007.1
DB_XREF= gi:32981030
TID=Os.19948.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0571D04.16 (P0571D04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075L15, full insert sequence.
FL= gb:AK071007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2932010/11Eukaryotic rRNA processing protein EBP2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29300OsAffx.22328.1.S1_at11/117+17170999..17171888hypothetical protein
LOC_Os07g29310Os.37213.1.S1_at11/117+17184979..17185946Auxin responsive protein, expressed
LOC_Os07g29320Os.19948.1.S1_at10/117+17193629..17195283Eukaryotic rRNA processing protein EBP2 containing protein, expressed
LOC_Os07g29330Os.12688.1.S1_at11/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29330OsAffx.16011.1.S1_at3/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29340OsAffx.16471.1.S1_at11/117+17211644..17212974hypothetical protein
LOC_Os07g29350NANA7+17216101..17216455hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19948.1.S1_at--769--2431Chr07:17194088..17194112 (25 bp)
AAAAGAGGCCTGGTGTTTCTCCTGG
LOC_Os07g29320
Os.19948.1.S1_at--229--7411Chr07:17194064..17194088 (25 bp)
GTGATAGGTCTGGTGGTCTTGCTAA
LOC_Os07g29320
Os.19948.1.S1_at--310--8951Chr07:17193940..17193964 (25 bp)
TGACTTCAGAGGATTCAACCAGATG
LOC_Os07g29320
Os.19948.1.S1_at--39--9791Chr07:17193869..17193893 (25 bp)
TAAGAATCTGCGTCTGCTTCCTTGA
LOC_Os07g29320
Os.19948.1.S1_at--834--171Chr07:17193814..17193838 (25 bp)
ATTTTACTGCAGTACATCGTTGCTA
LOC_Os07g29320
Os.19948.1.S1_at--519--6811Chr07:17193730..17193754 (25 bp)
GTTTTAACTATGCTGTTCTCCACAA
LOC_Os07g29320
Os.19948.1.S1_at--680--4731Chr07:17193719..17193743 (25 bp)
GCTGTTCTCCACAAGATATTTGCAT
LOC_Os07g29320
Os.19948.1.S1_at--1069--10731Chr07:17193700..17193724 (25 bp)
TTGCATGTATCTGGTGATGGCCCTT
LOC_Os07g29320
Os.19948.1.S1_at--341--6231Chr07:17193685..17193709 (25 bp)
GATGGCCCTTTTTCGTTGTGTGATG
LOC_Os07g29320
Os.19948.1.S1_at--472--2731Chr07:17193657..17193681 (25 bp)
AAGAATCAATCTTACCCTGGAATTA
LOC_Os07g29320
Os.19948.1.S1_at--1047--9771Chr07:17193618..17193642 (25 bp)
TAAGGATGCTTGGTGCACTTCCTGT
NONE
Target Sequence 
AAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAAACAAGGAAAGAACAGGAAATCA
AGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCTGAAGAAGCAAAACACTGCNGAGACGACAAATGACTTCAGAGG
ATTCAACCAGATGGACAAGTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTTCC
TTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGTTGCTAGATGCGAACGTTAGTTGAGAT
AGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTATGTTTTAACTATGCTGTTCTCCACAAGATATTTGCATGTATCT
GGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAGAATCAATCTTACCCTGGAATTATCCNAANAGTGTCTTAAGGATGCT
TGGTGCACTTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis