Browse Element(s) Details


OsAffx.22328.1.S1_at

Description gb:NM_187255.1
DB_XREF= gi:34901595
GEN=P0571D04.12
TID=OsAffx.22328.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0571D04.12 (P0571D04.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2930011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29280NANA7+17157852..17158079hypothetical protein
LOC_Os07g29290Os.5937.1.S1_at10/117+17160571..17164004Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g29300OsAffx.22328.1.S1_at11/117+17170999..17171888hypothetical protein
LOC_Os07g29310Os.37213.1.S1_at11/117+17184979..17185946Auxin responsive protein, expressed
LOC_Os07g29320Os.19948.1.S1_at10/117+17193629..17195283Eukaryotic rRNA processing protein EBP2 containing protein, expressed
LOC_Os07g29330Os.12688.1.S1_at11/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29330OsAffx.16011.1.S1_at3/117+17196824..17207789Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22328.1.S1_at--453--8011Chr07:17171416..17171440 (25 bp)
GGAGGACGACCAATGAGCGGCAACC
LOC_Os07g29300
OsAffx.22328.1.S1_at--805--3191Chr07:17171426..17171450 (25 bp)
CAATGAGCGGCAACCGGCAGGAAGA
LOC_Os07g29300
OsAffx.22328.1.S1_at--699--4651Chr07:17171462..17171486 (25 bp)
GCGTGACGACCTAGGCGGCACCCTT
LOC_Os07g29300
OsAffx.22328.1.S1_at--318--3811Chr07:17171513..17171537 (25 bp)
CTCCATCCACCGTGACGAGGAGATG
LOC_Os07g29300
OsAffx.22328.1.S1_at--938--1871Chr07:17171539..17171563 (25 bp)
ACGTTGTGGACGATGCCGCGAAGGC
LOC_Os07g29300
OsAffx.22328.1.S1_at--165--4031Chr07:17171596..17171620 (25 bp)
CGTTCTCGCCGCTGATACGATCAGT
LOC_Os07g29300
OsAffx.22328.1.S1_at--947--8831Chr07:17171608..17171632 (25 bp)
TGATACGATCAGTCCCTGGGAAGGA
LOC_Os07g29300
OsAffx.22328.1.S1_at--360--1151Chr07:17171618..17171642 (25 bp)
AGTCCCTGGGAAGGAGCTCTTGCAA
LOC_Os07g29300
OsAffx.22328.1.S1_at--801--971Chr07:17171629..17171653 (25 bp)
AGGAGCTCTTGCAACGCGCGAAGGC
LOC_Os07g29300
OsAffx.22328.1.S1_at--530--4511Chr07:17171655..17171679 (25 bp)
GCCGCCTCAGGCTGTGGTTCACCAA
LOC_Os07g29300
OsAffx.22328.1.S1_at--988--891Chr07:17171663..17171687 (25 bp)
AGGCTGTGGTTCACCAACGCCCCTG
LOC_Os07g29300
Target Sequence 
GGAGGACGACCAATGAGCGGCAACCGGCAGGAAGAAGGGGAGGCGCGCGTGACGACCTAGGCGGCACCCTTCCTGCTTCT
GTCACGGCCATCACGTCCTCCATCCACCGTGACGAGGAGATGGACGTTGTGGACGATGCCGCGAAGGCGGCCGGGAGGGA
GAAGCGGGGCACGCCGATGTCGTTCTCGCCGCTGATACGATCAGTCCCTGGGAAGGAGCTCTTGCAACGCGCGAAGGCGG
CCGCCTCAGGCTGTGGTTCACCAACGCCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis