Browse Element(s) Details


Os.37213.1.S1_at

Description gb:AK060076.1
DB_XREF= gi:32970094
TID=Os.37213.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0571D04.15 (P0571D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B11, full insert sequence.
FL= gb:AK060076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2931011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29290Os.5937.1.S1_at10/117+17160571..17164004Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os07g29300OsAffx.22328.1.S1_at11/117+17170999..17171888hypothetical protein
LOC_Os07g29310Os.37213.1.S1_at11/117+17184979..17185946Auxin responsive protein, expressed
LOC_Os07g29320Os.19948.1.S1_at10/117+17193629..17195283Eukaryotic rRNA processing protein EBP2 containing protein, expressed
LOC_Os07g29330Os.12688.1.S1_at11/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29330OsAffx.16011.1.S1_at3/117+17196824..17207789Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37213.1.S1_at--956--9531Chr07:17185580..17185604 (25 bp)
TCTAGGTATTTGTGTTCGGATTGGT
LOC_Os07g29310
Os.37213.1.S1_at--1093--7751Chr07:17185602..17185626 (25 bp)
GGTGATCCATGCATGACTTGATTCT
LOC_Os07g29310
Os.37213.1.S1_at--467--6671Chr07:17185652..17185676 (25 bp)
GTTGCTATTGATCGATGTTCATTAA
LOC_Os07g29310
Os.37213.1.S1_at--659--8731Chr07:17185683..17185707 (25 bp)
TGTATGCCCTCCTGGTGAGTTTAAC
LOC_Os07g29310
Os.37213.1.S1_at--629--6071Chr07:17185699..17185723 (25 bp)
GAGTTTAACGCGTGCCTGTATGTGC
LOC_Os07g29310
Os.37213.1.S1_at--1082--4471Chr07:17185712..17185736 (25 bp)
GCCTGTATGTGCACGTTACATGCGT
LOC_Os07g29310
Os.37213.1.S1_at--24--4631Chr07:17185733..17185757 (25 bp)
GCGTAATGTTGCATGTTTTCAGGAG
LOC_Os07g29310
Os.37213.1.S1_at--411--8331Chr07:17185768..17185792 (25 bp)
GGCTGCCATGATGTAACATATCTTC
LOC_Os07g29310
Os.37213.1.S1_at--771--10191Chr07:17185804..17185828 (25 bp)
TATATCCGGCTTTGAATTTTCTAGA
LOC_Os07g29310
Os.37213.1.S1_at--242--751Chr07:17185867..17185891 (25 bp)
ATGTTTGCAATGTATGATCTCTGTA
LOC_Os07g29310
Os.37213.1.S1_at--168--10111Chr07:17185893..17185917 (25 bp)
TATGTGTGGCACATTTCCTTCTTTT
LOC_Os07g29310
Target Sequence 
TCTAGGTATTTGTGTTCGGATTGGTGATCCATGCATGACTTGATTCTTGGGAGAATTGGTGATGTTTGATTTGTTGCTAT
TGATCGATGTTCATTAATTTTTTTGTATGCCCTCCTGGTGAGTTTAACGCGTGCCTGTATGTGCACGTTACATGCGTAAT
GTTGCATGTTTTCAGGAGGGCATGTACTGGCTGCCATGATGTAACATATCTTCTTAATTAGCTTTATATCCGGCTTTGAA
TTTTCTAGATGTGAGTACGTACTTTGTAATATCATCAGTGTGTAATTATGTTTGCAATGTATGATCTCTGTAATATGTGT
GGCACATTTCCTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis