Browse Element(s) Details


OsAffx.16471.1.S1_at

Description tigr:9635.m02856
TID=OsAffx.16471.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2934011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29320Os.19948.1.S1_at10/117+17193629..17195283Eukaryotic rRNA processing protein EBP2 containing protein, expressed
LOC_Os07g29330Os.12688.1.S1_at11/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29330OsAffx.16011.1.S1_at3/117+17196824..17207789Protein kinase domain containing protein, expressed
LOC_Os07g29340OsAffx.16471.1.S1_at11/117+17211644..17212974hypothetical protein
LOC_Os07g29350NANA7+17216101..17216455hypothetical protein
LOC_Os07g29360Os.18377.3.S1_x_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29360Os.18377.1.S1_a_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16471.1.S1_at--774--811Chr07:17212795..17212819 (25 bp)
ATGGTGATGGCATTACTCCTTGTCG
LOC_Os07g29340
OsAffx.16471.1.S1_at--814--6231Chr07:17212800..17212824 (25 bp)
GATGGCATTACTCCTTGTCGTTGAT
LOC_Os07g29340
OsAffx.16471.1.S1_at--237--151Chr07:17212806..17212830 (25 bp)
ATTACTCCTTGTCGTTGATGTCGTG
LOC_Os07g29340
OsAffx.16471.1.S1_at--156--9251Chr07:17212811..17212835 (25 bp)
TCCTTGTCGTTGATGTCGTGGCTAT
LOC_Os07g29340
OsAffx.16471.1.S1_at--51--4051Chr07:17212818..17212842 (25 bp)
CGTTGATGTCGTGGCTATCCGAGAT
LOC_Os07g29340
OsAffx.16471.1.S1_at--362--771Chr07:17212823..17212847 (25 bp)
ATGTCGTGGCTATCCGAGATTGGTC
LOC_Os07g29340
OsAffx.16471.1.S1_at--721--8491Chr07:17212829..17212853 (25 bp)
TGGCTATCCGAGATTGGTCCTGGCA
LOC_Os07g29340
OsAffx.16471.1.S1_at--361--6051Chr07:17212838..17212862 (25 bp)
GAGATTGGTCCTGGCACCCGGCTTT
LOC_Os07g29340
OsAffx.16471.1.S1_at--895--8091Chr07:17212850..17212874 (25 bp)
GGCACCCGGCTTTGTCAGGGAGGAG
LOC_Os07g29340
OsAffx.16471.1.S1_at--6--6151Chr07:17212872..17212896 (25 bp)
GAGGGTCATCGAGATGCATCATGAT
LOC_Os07g29340
OsAffx.16471.1.S1_at--1105--3551Chr07:17212888..17212912 (25 bp)
CATCATGATGAGTACGGTGCGGCCG
LOC_Os07g29340
Target Sequence 
ATGGTGATGGCATTACTCCTTGTCGTTGATGTCGTGGCTATCCGAGATTGGTCCTGGCACCCGGCTTTGTCAGGGAGGAG
GGTCATCGAGATGCATCATGATGAGTACGGTGCGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis