Browse Element(s) Details


Os.18400.1.S1_at

Description gb:AK065349.1
DB_XREF= gi:32975367
TID=Os.18400.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022H13, full insert sequence.
FL= gb:AK065349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1343011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13390Os.55149.1.S1_at11/118+7957286..7962203expressed protein
LOC_Os08g13400NANA8+7966587..7966832hypothetical protein
LOC_Os08g13410NANA8+7970000..7972730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13420OsAffx.16976.1.S1_at11/118+7976216..7979195D-mannose binding lectin family protein
LOC_Os08g13430Os.18400.1.S1_at11/118+7984754..7987386expressed protein
LOC_Os08g13440Os.27483.1.S1_at11/118+7988061..7989374Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g13450NANA8+8000829..8001272hypothetical protein
LOC_Os08g13460OsAffx.16977.1.S1_at11/118+8004693..8008003expressed protein
LOC_Os08g13460OsAffx.28520.1.S1_at1/118+8004693..8008003expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18400.1.S1_at--515--9151Chr08:7985204..7985228 (25 bp)
TGCGACCCGGCGTGTTTTTTCGGAT
LOC_Os08g13430
Os.18400.1.S1_at--447--8771Chr08:7985192..7985216 (25 bp)
TGTTTTTTCGGATTTGTAGTCCCAG
LOC_Os08g13430
Os.18400.1.S1_at--1041--8751Chr08:7985178..7985202 (25 bp)
TGTAGTCCCAGTTGGTGCTACCAAT
LOC_Os08g13430
Os.18400.1.S1_at--1031--8951Chr08:7985086..7985110 (25 bp)
TGACACGGCCTATCAACTTTTTGAA
LOC_Os08g13430
Os.18400.1.S1_at--805--8071Chr08:7984956..7984980 (25 bp)
GGAGCAGAGCCAACTAAGATTTTAT
LOC_Os08g13430
Os.18400.1.S1_at--831--9771Chr08:7984914..7984938 (25 bp)
TAAGAAGGAAACACCAGCTTTGCTG
LOC_Os08g13430
Os.18400.1.S1_at--1057--3391Chr08:7984900..7984924 (25 bp)
CAGCTTTGCTGAGTGGGACATCATT
LOC_Os08g13430
Os.18400.1.S1_at--1102--10391Chr08:7984876..7984900 (25 bp)
TTATCTTCCCAGAGACCAAGGGAGG
LOC_Os08g13430
Os.18400.1.S1_at--934--8371Chr08:7984853..7984877 (25 bp)
GGCGAGGAATTCACGATCTTGGGAT
LOC_Os08g13430
Os.18400.1.S1_at--1139--9851Chr08:7984815..7984839 (25 bp)
TTGCTTAGCAAGTGGTTACTTACCA
LOC_Os08g13430
Os.18400.1.S1_at--99--9791Chr08:7984796..7984820 (25 bp)
TTACCAGTTACCACCGATGAAATGT
LOC_Os08g13430
Target Sequence 
TGCGACCCGGCGTGTTTTTTCGGATTTGTAGTCCCAGTTGGTGCTACCAATCGGGACTAAAGTGATGATATTTAATTCCG
GTTTATAATACCAATCGGGACTAAAGATCCTTGGGGCCTGACACGGCCTATCAACTTTTTGAAGCGGGNCAAAAAAAATG
ATCTTACCAACCAGGACTAAATGATTGTATTTACGGTTAATGATGGTCGTGGTGGTGCGTATGTGATAGAAAAAAAATCG
AAGTACATGGAGCAGAGCCAACTAAGATTTTATTCGCAAGGGGATGGATATAAGAAGGAAACACCAGCTTTGCTGAGTGG
GACATCATTTATCTTCCCAGAGACCAAGGGAGGCGAGGAATTCACGATCTTGGGATTAAGGTTATTGCTTTGCTTAGCAA
GTGGTTACTTACCAGTTACCACCGATGAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis