Browse Element(s) Details


Os.18438.1.S1_at

Description gb:AK121901.1
DB_XREF= gi:37991524
TID=Os.18438.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105G24, full insert sequence.
FL= gb:AK121901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2884011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28810OsAffx.27069.1.S1_at10/115+16806760..16807741hypothetical protein
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified
LOC_Os05g28830Os.20378.1.S1_at11/115+16816424..16818149expressed protein
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein
LOC_Os05g28850NANA5+16834133..16834536hypothetical protein
LOC_Os05g28860Os.54117.1.S1_at11/115+16837937..168440343'-5' exonuclease family protein, expressed
LOC_Os05g28870Os.6174.1.S1_at11/115+16847174..16851170Mitochondrial carrier protein, expressed
LOC_Os05g28880OsAffx.4462.1.S1_at11/115+16852728..16852976hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18438.1.S1_at--858--3791Chr05:16828451..16828475 (25 bp)
CTCCTCCACTTCTCGGAATGAAAGG
LOC_Os05g28840
Os.18438.1.S1_at--1093--9511Chr05:16828354..16828378 (25 bp)
TCTCTTCTACGACTGCTACTACTGC
LOC_Os05g28840
Os.18438.1.S1_at--760--6211Chr05:16828271..16828295 (25 bp)
GAGGCGTTTGCGAATGCTCCATTTG
LOC_Os05g28840
Os.18438.1.S1_at--621--10391Chr05:16828208..16828232 (25 bp)
TTTTGCGGCGGCGATAGCTAGTTGT
LOC_Os05g28840
Os.18438.1.S1_at--297--4871Chr05:16828192..16828216 (25 bp)
GCTAGTTGTGTTGCTTATCTTTTGT
LOC_Os05g28840
Os.18438.1.S1_at--186--2251Chr05:16828103..16828127 (25 bp)
AAATTTTCTCCTGCTGTTTTGGAGG
LOC_Os05g28840
Os.18438.1.S1_at--602--3571Chr05:16828088..16828112 (25 bp)
GTTTTGGAGGCCTCAACCCGAGTTG
LOC_Os05g28840
Os.18438.1.S1_at--1008--1451Chr05:16828073..16828097 (25 bp)
ACCCGAGTTGGTATTTGGCTATTTG
LOC_Os05g28840
Os.18438.1.S1_at--78--8311Chr05:16828057..16828081 (25 bp)
GGCTATTTGCTACCACAGTTTGTTT
LOC_Os05g28840
Os.18438.1.S1_at--1029--6851Chr05:16828040..16828064 (25 bp)
GTTTGTTTGTTGTTACTTCTACTGA
LOC_Os05g28840
Os.18438.1.S1_at--848--10211Chr05:16827999..16828023 (25 bp)
TATTCACCAATACTTGACACTTGAT
LOC_Os05g28840
Target Sequence 
CTCCTCCACTTCTCGGAATGAAAGGCNCCCTTGGAACATTTGCAAGTTAGATTTATATTTTTTTTTTCCCACCGGAAGGA
AGGTAATGATCCTGATATCTCTTCTACGACTGCTACTACTGCTACTAATTCGATGAAATTTGNAGATTGCGAGTGTATAT
TGATGAGCTAANTGGAGGGTGGGAGGCGTTTGCGAATGCTCCATTTGNATGCGTGCGCGGTAGGCGAACTTGAGGAATAA
TATGCATTTTGCGGCGGCGATAGCTAGTTGTGTTGCTTATCTTTTGTTACTGATCAGATGATTTAGTAGTAGAGTTGTGT
GGGTGGATGTATCTTTTGTTGATCGATAAAAAAATTTTCTCCTGCTGTTTTGGAGGCCTCAACCCGAGTTGGTATTTGGC
TATTTGCTACCACAGTTTGTTTGTTGTTACTTCTACTGAATTGAAGATGGTGTAATATTCACCAATACTTGACACTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis