Browse Element(s) Details


OsAffx.4462.1.S1_at

Description tigr:9633.m02647
TID=OsAffx.4462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2888011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein
LOC_Os05g28850NANA5+16834133..16834536hypothetical protein
LOC_Os05g28860Os.54117.1.S1_at11/115+16837937..168440343'-5' exonuclease family protein, expressed
LOC_Os05g28870Os.6174.1.S1_at11/115+16847174..16851170Mitochondrial carrier protein, expressed
LOC_Os05g28880OsAffx.4462.1.S1_at11/115+16852728..16852976hypothetical protein
LOC_Os05g28890Os.47130.4.A1_x_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28890Os.37083.2.S1_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28900NANA5+16856638..16862225retrotransposon protein, putative, unclassified
LOC_Os05g28910Os.28943.1.S1_x_at2/115+16862824..16865974retrotransposon protein, putative, unclassified
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4462.1.S1_at--917--6651Chr05:16852758..16852782 (25 bp)
GTTGAGCTTGCACGCTCTCATGAGG
LOC_Os05g28880
OsAffx.4462.1.S1_at--48--4931Chr05:16852763..16852787 (25 bp)
GCTTGCACGCTCTCATGAGGAGGAG
LOC_Os05g28880
OsAffx.4462.1.S1_at--498--4391Chr05:16852809..16852833 (25 bp)
GCCAAGTCTGCCAAGAAGCGTACCA
LOC_Os05g28880
OsAffx.4462.1.S1_at--370--1431Chr05:16852822..16852846 (25 bp)
AGAAGCGTACCACATGCATCGTAGA
LOC_Os05g28880
OsAffx.4462.1.S1_at--368--4631Chr05:16852826..16852850 (25 bp)
GCGTACCACATGCATCGTAGAGGAA
LOC_Os05g28880
OsAffx.4462.1.S1_at--720--511Chr05:16852839..16852863 (25 bp)
ATCGTAGAGGAATATGAGCGCGTCA
LOC_Os05g28880
OsAffx.4462.1.S1_at--597--5231Chr05:16852848..16852872 (25 bp)
GAATATGAGCGCGTCATCTTGCTTA
LOC_Os05g28880
OsAffx.4462.1.S1_at--78--5891Chr05:16852854..16852878 (25 bp)
GAGCGCGTCATCTTGCTTATTGGCT
LOC_Os05g28880
OsAffx.4462.1.S1_at--799--431Chr05:16852863..16852887 (25 bp)
ATCTTGCTTATTGGCTCCCTCACAT
LOC_Os05g28880
OsAffx.4462.1.S1_at--530--9251Chr05:16852899..16852923 (25 bp)
TCCTCCTTAGCTGTGGACCACTGGA
LOC_Os05g28880
OsAffx.4462.1.S1_at--326--3671Chr05:16852904..16852928 (25 bp)
CTTAGCTGTGGACCACTGGAGCCCC
LOC_Os05g28880
Target Sequence 
GTTGAGCTTGCACGCTCTCATGAGGAGGAGCGGCTCCGCTTGGAGCGCGAGGCCAAGTCTGCCAAGAAGCGTACCACATG
CATCGTAGAGGAATATGAGCGCGTCATCTTGCTTATTGGCTCCCTCACATGCCTCCTCTTCTCCTCCTTAGCTGTGGACC
ACTGGAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis