Browse Element(s) Details


OsAffx.4463.1.S1_at

Description tigr:9633.m02649
TID=OsAffx.4463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2893011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28870Os.6174.1.S1_at11/115+16847174..16851170Mitochondrial carrier protein, expressed
LOC_Os05g28880OsAffx.4462.1.S1_at11/115+16852728..16852976hypothetical protein
LOC_Os05g28890Os.47130.4.A1_x_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28890Os.37083.2.S1_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28900NANA5+16856638..16862225retrotransposon protein, putative, unclassified
LOC_Os05g28910Os.28943.1.S1_x_at2/115+16862824..16865974retrotransposon protein, putative, unclassified
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4463.1.S1_at--714--10171Chr05:16876222..16876246 (25 bp)
TATTCCGCCAACTTTCTGAATCTCA
LOC_Os05g28930
OsAffx.4463.1.S1_at--1053--471Chr05:16876252..16876276 (25 bp)
ATCGTCACTTTCATTATCGCCGTTA
LOC_Os05g28930
OsAffx.4463.1.S1_at--745--9331Chr05:16876268..16876561 (25 bp)
TCGCCGTTATTTTCCGTGCTGAGAA
LOC_Os05g28930
OsAffx.4463.1.S1_at--153--4051Chr05:16876567..16876591 (25 bp)
CGATAGCAAGCTGCGCCGGCAAGAT
LOC_Os05g28930
OsAffx.4463.1.S1_at--1138--8691Chr05:16877046..16877065 (20 bp)
TGTCCGCGAAGCTAGCCAAGGTGTT
LOC_Os05g28930
OsAffx.4463.1.S1_at--716--3191Chr05:16877057..16877081 (25 bp)
CAAGGTGTTCCCGTCCAAGTACTGG
LOC_Os05g28930
OsAffx.4463.1.S1_at--873--2831Chr05:16877073..16877097 (25 bp)
AAGTACTGGGCGACGGTGCTGACAT
LOC_Os05g28930
OsAffx.4463.1.S1_at--721--7711Chr05:16877495..16877519 (25 bp)
GGGTGTTCAACACCGGTATCACCTT
LOC_Os05g28930
OsAffx.4463.1.S1_at--168--10631Chr05:16877518..16877542 (25 bp)
TTCGTGCTCATCTCGTGGGCAATCA
LOC_Os05g28930
OsAffx.4463.1.S1_at--1068--831Chr05:16877605..16877629 (25 bp)
ATGGACTCACTGTTGCTCGGCGCAA
LOC_Os05g28930
OsAffx.4463.1.S1_at--486--4811Chr05:16877619..16877643 (25 bp)
GCTCGGCGCAAACATCTATCTAGGA
LOC_Os05g28930
Target Sequence 
TATTCCGCCAACTTTCTGAATCTCATCCCTATCGTCACTTTCATTATCGCCGTTATTTTCCGTGCTGAGAAGCTGGCGAT
AGCAAGCTGCGCCGGCAAGATGAAGGTCCTGGGCACGGTCCTGTCCGCGAAGCTAGCCAAGGTGTTCCCGTCCAAGTACT
GGGCGACGGTGCTGACATGCCTGTCAGGGAGCCTGCAGGCACTCGTCGCCGGCGTCTTGACCACCGGCGACTGGTCGGAG
TGGAAGCTCAGCTGGGACCTGCGCCTTCTCGCCGTCGCCTACTCGGGGGTGTTCAACACCGGTATCACCTTCGTGCTCAT
CTCGTGGGCAATCACGCGTCGCGGGCCGATCTACCCTTCCATGTTCAACTCGCTCTCGCTCATCATCACCACCGTCATGG
ACTCACTGTTGCTCGGCGCAAACATCTATCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis