Browse Element(s) Details


OsAffx.4464.1.S1_s_at

Description tigr:9633.m02652
TID=OsAffx.4464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At2g36305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2895011/11CAAX amino terminal protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4464.1.S1_s_at--857--1091Chr05:16894486..16894510 (25 bp)
AGTGGCATCAGTAGCATTTCTGGCT
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--798--191Chr05:16894501..16894525 (25 bp)
ATTTCTGGCTGGTTCATTGTCCTTC
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--75--3171Chr05:16894688..16894712 (25 bp)
AATTGATGGTAGTGGAGCCTTCCCT
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--467--10051Chr05:16894736..16894760 (25 bp)
TAGTTGATCCTGCTATTGGCCATTT
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--66--8751Chr05:16894787..16894811 (25 bp)
TGTAAGATACTTTGCCCTTCTCATG
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--248--7711Chr05:16894812..16894836 (25 bp)
GGGTGCTTGCAAAACTTACATTTCT
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--876--5551Chr05:16894858..16894882 (25 bp)
GAAAGCTGTCAGACTTGTTTGGCTA
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--1152--3611Chr05:16894871..16894895 (25 bp)
CTTGTTTGGCTATATTGTCGGATTA
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--613--10051Chr05:16894894..16894918 (25 bp)
TAGTTCCTATATTGTCGGCTGCCAA
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--778--211Chr05:16894902..16894926 (25 bp)
ATATTGTCGGCTGCCAATGTTGGCT
LOC_Os05g28950
OsAffx.4464.1.S1_s_at--249--5111Chr05:16894920..16894944 (25 bp)
GTTGGCTATGTTGTAAATTCTGTCG
LOC_Os05g28950
Target Sequence 
AGTGGCATCAGTAGCATTTCTGGCTGGTTCATTGTCCTTCTTTTGGCTCCTTTTCCCTGCGACGAGCCCAAAACTATATA
ATTCTAGGATAGATCAGTGCAGTTGTTGGCATGGATATTGCAGATGGAGCTAATACAATTCTATATTGGAGGCCTGACAG
GCCTCCTGGTGCTGACATGAAGTAACTAGCAAGGCAAACCCTAATTGATGGTAGTGGAGCCTTCCCTCAGTTTTTTGTTT
TTCAGGTTTTTAGTTGATCCTGCTATTGGCCATTTGAAATTTACAGTGTGTAAAATTTTGATGTAAGATACTTTGCCCTT
CTCATGGGGTGCTTGCAAAACTTACATTTCTTCACATGTAACAAGCAGATTAGAAAGCTGTCAGACTTGTTTGGCTATAT
TGTCGGATTAGTTCCTATATTGTCGGCTGCCAATGTTGGCTATGTTGTAAATTCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4464.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis