Browse Element(s) Details


OsAffx.4464.1.S1_at

Description tigr:9633.m02652
TID=OsAffx.4464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At2g36305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g289507/11CAAX amino terminal protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4464.1.S1_at--111--10271NONE
TTTGTTCACCCGAACAGGGAATATC
NONE
OsAffx.4464.1.S1_at--12--10791NONE
TTGTTCACCCGAACAGGGAATATCG
NONE
OsAffx.4464.1.S1_at--491--8731NONE
TGTTCACCCGAACAGGGAATATCGT
NONE
OsAffx.4464.1.S1_at--927--6731NONE
GTTCACCCGAACAGGGAATATCGTC
NONE
OsAffx.4464.1.S1_at--299--10511Chr05:16893935..16894320 (25 bp)
TTCACCCGAACAGGGAATATCGTCT
LOC_Os05g28950
OsAffx.4464.1.S1_at--762--9511Chr05:16894318..16894342 (25 bp)
TCTCTCCTATTGTTGCCCACATATT
LOC_Os05g28950
OsAffx.4464.1.S1_at--804--3771Chr05:16894319..16894343 (25 bp)
CTCTCCTATTGTTGCCCACATATTT
LOC_Os05g28950
OsAffx.4464.1.S1_at--46--10571Chr05:16894523..16894547 (25 bp)
TTCTTTTGGCTCCTTTTCCCTGCGA
LOC_Os05g28950
OsAffx.4464.1.S1_at--1115--4811Chr05:16894614..16894638 (25 bp)
GCTAATACAATTCTATATTGGAGGC
LOC_Os05g28950
OsAffx.4464.1.S1_at--972--3731Chr05:16894615..16894639 (25 bp)
CTAATACAATTCTATATTGGAGGCC
LOC_Os05g28950
OsAffx.4464.1.S1_at--71--9751Chr05:16894616..16894640 (25 bp)
TAATACAATTCTATATTGGAGGCCT
LOC_Os05g28950
Target Sequence 
TTTGTTCACCCGAACAGGGAATATCGTCTCTCCTATTGTTGCCCACATATTTTGTAACATAATGGGTTTGCCAGTTTTCT
CATCACCACAAAAAAGAGGAGTGGCATCAGTAGCATTTCTGGCTGGTTCATTGTCCTTCTTTTGGCTCCTTTTCCCTGCG
ACGAGCCCAAAACTATATAATTCTAGGATAGATCAGTGCAGTTGTTGGCATGGATATTGCAGATGGAGCTAATACAATTC
TATATTGGAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis