Browse Element(s) Details


OsAffx.27073.1.S1_at

Description tigr:9633.m02658
TID=OsAffx.27073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2900011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27073.1.S1_at--440--8351Chr05:16918204..16918228 (25 bp)
GGCGGCATCAAGGCCTACTGGAAGC
LOC_Os05g29000
OsAffx.27073.1.S1_at--392--371Chr05:16918198..16918222 (25 bp)
ATCAAGGCCTACTGGAAGCGCCGGG
LOC_Os05g29000
OsAffx.27073.1.S1_at--581--4551Chr05:16917844..16917868 (25 bp)
GCGCTGGTGGAGATCTACCGGTCCA
LOC_Os05g29000
OsAffx.27073.1.S1_at--3--4131Chr05:16917843..16917867 (25 bp)
CGCTGGTGGAGATCTACCGGTCCAT
LOC_Os05g29000
OsAffx.27073.1.S1_at--650--4711Chr05:16917842..16917866 (25 bp)
GCTGGTGGAGATCTACCGGTCCATC
LOC_Os05g29000
OsAffx.27073.1.S1_at--971--3891Chr05:16917841..16917865 (25 bp)
CTGGTGGAGATCTACCGGTCCATCC
LOC_Os05g29000
OsAffx.27073.1.S1_at--663--8611Chr05:16917840..16917864 (25 bp)
TGGTGGAGATCTACCGGTCCATCCT
LOC_Os05g29000
OsAffx.27073.1.S1_at--547--7731Chr05:16917839..16917863 (25 bp)
GGTGGAGATCTACCGGTCCATCCTC
LOC_Os05g29000
OsAffx.27073.1.S1_at--991--7511Chr05:16917838..16917862 (25 bp)
GTGGAGATCTACCGGTCCATCCTCG
LOC_Os05g29000
OsAffx.27073.1.S1_at--23--8051Chr05:16917836..16917860 (25 bp)
GGAGATCTACCGGTCCATCCTCGCG
LOC_Os05g29000
OsAffx.27073.1.S1_at--974--1771Chr05:16917828..16917852 (25 bp)
ACCGGTCCATCCTCGCGCGCGGTGG
LOC_Os05g29000
Target Sequence 
GGCGGCATCAAGGCCTACTGGAAGCGCCGGGGCTACGGCCGGCTCGATCCCGCCTCCTCCGCGCACCGCCGCCCGCGCCT
CCCCACCGCGGAGCTCGGCGACGGCCGCGGCGCGGCAGGAGGAGCGGGGCGGTGGCGGCGAGGGTGGCGAGTACGCCGCC
GCGGGCTCGGGCGGCGGATCCTGCGGGCGCTCTCGCCGCGGCGGCTGCTGGCGCGCCTCCGCGACGCGTACGTGCGGGGC
ATGCTCCGCCTCGCGTCCTCCGCCGCCGTCGCCGGCGGCGGCTCCGCTCTGTACGGCGGCCCCGCCGGCGGCGCCGACCC
CTTCGGGCGGCCGCGGCCGCTCAGGGAGTACGACGAGAAGGCGCTGGTGGAGATCTACCGGTCCATCCTCGCGCGCGGTG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis