Browse Element(s) Details


OsAffx.4466.1.S1_s_at

Description tigr:9633.m02660
TID=OsAffx.4466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT005249 At4g16060
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2902011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed
LOC_Os05g29040OsAffx.4467.1.S1_at11/115+16946972..16947567hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4466.1.S1_s_at--878--8631Chr05:16936008..16936032 (25 bp)
TGGGTACAGCCCATCGATGGCATGT
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--323--4551Chr05:16936016..16936040 (25 bp)
GCCCATCGATGGCATGTCAAAGCAA
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--110--1491Chr05:16936036..16936060 (25 bp)
AGCAAGATGCATTTCTAACCAAAAT
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--578--10711Chr05:16936065..16936089 (25 bp)
TTGCTTTGGGTCATCTCAAAGTGAG
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--81--2871Chr05:16936083..16936107 (25 bp)
AAGTGAGATGCATTTCTGAAGCAAA
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--520--10271Chr05:16936121..16936145 (25 bp)
TTTGAACTATCCATTAGCAGCACAT
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--311--391Chr05:16936165..16936189 (25 bp)
ATCAGCCATTACTTTGTTAGGCATG
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--847--4991Chr05:16936185..16936209 (25 bp)
GCATGTTGAATCTTGGCCATTCTGC
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--1107--4431Chr05:16936200..16936224 (25 bp)
GCCATTCTGCTATTAGAGTCGCCTT
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--320--6111Chr05:16936215..16936239 (25 bp)
GAGTCGCCTTTCACGATACTGATTG
LOC_Os05g29020
OsAffx.4466.1.S1_s_at--261--10711Chr05:16936237..16936261 (25 bp)
TTGCTTAATTTGCAGTGTCCTCGCT
LOC_Os05g29020
Target Sequence 
TGGGTACAGCCCATCGATGGCATGTCAAAGCAAGATGCATTTCTAACCAAAATGCTATTGCTTTGGGTCATCTCAAAGTG
AGATGCATTTCTGAAGCAAAGGGAAATCATTGTTTTGAACTATCCATTAGCAGCACATTTTCTATTGAAATGTCATTATC
AGCCATTACTTTGTTAGGCATGTTGAATCTTGGCCATTCTGCTATTAGAGTCGCCTTTCACGATACTGATTGCTTAATTT
GCAGTGTCCTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4466.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis