Browse Element(s) Details


Os.13973.2.S1_s_at

Description gb:AK071714.1
DB_XREF= gi:32981737
TID=Os.13973.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108P17, full insert sequence.
FL= gb:AK071714.1 gb:AK109333.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2902011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed
LOC_Os05g29040OsAffx.4467.1.S1_at11/115+16946972..16947567hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13973.2.S1_s_at--601--1571Chr05:16936424..16936448 (25 bp)
AGCTAGCTAGCTCCACGAAGACGAC
LOC_Os05g29020
Os.13973.2.S1_s_at--381--831Chr05:16936471..16936495 (25 bp)
ATGGATCGAACTTCCATCCGCTTCG
LOC_Os05g29020
Os.13973.2.S1_s_at--620--3051Chr05:16936506..16936530 (25 bp)
AATCTGACGGTTGGTGGTGTTCCTC
LOC_Os05g29020
Os.13973.2.S1_s_at--828--8611Chr05:16936520..16936544 (25 bp)
TGGTGTTCCTCACAATTCTGCTAAA
LOC_Os05g29020
Os.13973.2.S1_s_at--148--3151Chr05:16936533..16936557 (25 bp)
AATTCTGCTAAATAATCCCTGATGC
LOC_Os05g29020
Os.13973.2.S1_s_at--1074--3151Chr05:16936579..16936603 (25 bp)
AATTCCAATTTTTCGGGCCACATAG
LOC_Os05g29020
Os.13973.2.S1_s_at--729--7551Chr05:16936593..16936617 (25 bp)
GGGCCACATAGTGTTCAGACTTTCA
LOC_Os05g29020
Os.13973.2.S1_s_at--857--8191Chr05:16936620..16936644 (25 bp)
GGAAGATTGTGATTCATGACCCTCT
LOC_Os05g29020
Os.13973.2.S1_s_at--475--691Chr05:16936635..16936659 (25 bp)
ATGACCCTCTTCATGGGAGAGTTGA
LOC_Os05g29020
Os.13973.2.S1_s_at--170--1111Chr05:16936685..16936709 (25 bp)
AGTGACTATTTTGTCACCACCACCA
LOC_Os05g29020
Os.13973.2.S1_s_at--404--111Chr05:16936721..16936745 (25 bp)
ATTCTGGAGCCATATGATACATGCA
LOC_Os05g29020
Target Sequence 
AGCTAGCTAGCTCCACGAAGACGACTCCGTCGACTCCCACAGCCACCATGGATCGAACTTCCATCCGCTTCGCTGTCGCT
CAAATCTGACGGTTGGTGGTGTTCCTCACAATTCTGCTAAATAATCCCTGATGCTTCAGTGCATAATACTACCAAAATTC
CAATTTTTCGGGCCACATAGTGTTCAGACTTTCAGAGGAAGATTGTGATTCATGACCCTCTTCATGGGAGAGTTGAATGA
TTGATGTACCACAACAATAACAGTGACTATTTTGTCACCACCACCACCACCACAGAAATTCTGGAGCCATATGATACATG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13973.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis