Browse Element(s) Details


Os.13973.3.S1_at

Description gb:AK060575.1
DB_XREF= gi:32970593
TID=Os.13973.3
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D10, full insert sequence.
FL= gb:AK060575.1 gb:AK100777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2903011/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed
LOC_Os05g29040OsAffx.4467.1.S1_at11/115+16946972..16947567hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13973.3.S1_at--1137--7191Chr05:16936999..16937023 (25 bp)
GTCGTCGTTGAGAGGCGCCACAAAA
LOC_Os05g29030
Os.13973.3.S1_at--1120--2371Chr05:16936965..16936989 (25 bp)
AAACGCAGATTGTTACATGCCAGAA
LOC_Os05g29030
Os.13973.3.S1_at--209--5511Chr05:16936940..16936964 (25 bp)
GAACAATGCAATTTGCCGCCATGAT
LOC_Os05g29030
Os.13973.3.S1_at--631--10831Chr05:16936916..16936940 (25 bp)
TTGGGACGGTGCACGATTGACCTGA
LOC_Os05g29030
Os.13973.3.S1_at--77--8931Chr05:16936894..16936918 (25 bp)
TGACCTGCCGGTGATGAACTCTGCT
LOC_Os05g29030
Os.13973.3.S1_at--605--9091Chr05:16936870..16936894 (25 bp)
TGCTGCTAGTGGATGACCGGGAAAA
LOC_Os05g29030
Os.13973.3.S1_at--418--1691Chr05:16936824..16936848 (25 bp)
ACCACCGTCATTGTCAAAAAGTTGT
LOC_Os05g29030
Os.13973.3.S1_at--546--7251Chr05:16936801..16936825 (25 bp)
GTCCGAGATTCAATTCAACAGCAGC
LOC_Os05g29030
Os.13973.3.S1_at--675--2791Chr05:16936752..16936776 (25 bp)
AAGATGCATTTTGTCCTCATTTTTT
LOC_Os05g29030
Os.13973.3.S1_at--438--10311Chr05:16936725..16936749 (25 bp)
TTTCTGCATGTATCATATGGCTCCA
LOC_Os05g29030
Os.13973.3.S1_at--746--1471Chr05:16936643..16936665 (23 bp)
AGAATCATTCAACTCTCCCATGAAG
LOC_Os05g29030
Target Sequence 
GTCGTCGTTGAGAGGCGCCACAAAAANNAAAAAAAAACGCAGATTGTTACATGCCAGAAGAACAATGCAATTTGCCGCCA
TGATTGGGACGGTGCACGATTGACCTGACCTGCCGGTGATGAACTCTGCTGCTGCTAGTGGATGACCGGGAAAAATCCAA
TCCTCCGGCTTTCACACCACCGTCATTGTCAAAAAGTTGTCCGAGATTCAATTCAACAGCAGCCACAAGAAAAAGGCAGG
GAAAAAAAAGATGCATTTTGTCCTCATTTTTTTTTTTTCTGCATGTATCATATGGCTCCAGAATTTCTGTGGTGGTGGTG
GTGGTGACAAAATAGTCACTGTTATTGTTGTGGTACAAGAATCATTCAACTCTCCCATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13973.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis