Browse Element(s) Details


OsAffx.4465.1.S1_at

Description tigr:9633.m02655
TID=OsAffx.4465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2897011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4465.1.S1_at--483--6211Chr05:16906100..16906124 (25 bp)
GAGGCGGTGCGTCCATGCGTGAGGC
LOC_Os05g28970
OsAffx.4465.1.S1_at--551--6731Chr05:16906204..16906228 (25 bp)
GTTCATTCCCGAACCGACGATCGCA
LOC_Os05g28970
OsAffx.4465.1.S1_at--31--8071Chr05:16907677..16907701 (25 bp)
GGAGACATACCTTATTTCCACCATG
LOC_Os05g28970
OsAffx.4465.1.S1_at--1046--9951Chr05:16907684..16907708 (25 bp)
TACCTTATTTCCACCATGGTAATGG
LOC_Os05g28970
OsAffx.4465.1.S1_at--629--7851Chr05:16907707..16907731 (25 bp)
GGTAGTGCCATTATGGTCCATCTTG
LOC_Os05g28970
OsAffx.4465.1.S1_at--1079--8571Chr05:16907720..16907744 (25 bp)
TGGTCCATCTTGATAACGGTAGTGA
LOC_Os05g28970
OsAffx.4465.1.S1_at--334--8191Chr05:16907751..16907775 (25 bp)
GGAAGAGGATATGAACCCATTACTT
LOC_Os05g28970
OsAffx.4465.1.S1_at--300--8931Chr05:16907762..16907786 (25 bp)
TGAACCCATTACTTACTAGTCCTAA
LOC_Os05g28970
OsAffx.4465.1.S1_at--204--10071Chr05:16907778..16907802 (25 bp)
TAGTCCTAACCAATTCATACCAGAG
LOC_Os05g28970
OsAffx.4465.1.S1_at--90--2791Chr05:16907813..16907837 (25 bp)
AAGAGATGGCATGTGCACGCTTCAG
LOC_Os05g28970
OsAffx.4465.1.S1_at--659--4991Chr05:16907821..16907845 (25 bp)
GCATGTGCACGCTTCAGGAGAGGTA
LOC_Os05g28970
Target Sequence 
GAGGCGGTGCGTCCATGCGTGAGGCGGGGTGGCGGCGCTACGCAGGTGAGAAGAGGAGGAGGAGGGCGGCTAGGGTTTTG
GTGCGGCGTGGCGACATCTGCGCCGTTCATTCCCGAACCGACGATCGCACGGCTGAGGAAGGGGTATGGAGACATACCTT
ATTTCCACCATGGTAATGGTAGTGCCATTATGGTCCATCTTGATAACGGTAGTGACATTATGGAAGAGGATATGAACCCA
TTACTTACTAGTCCTAACCAATTCATACCAGAGGGGATTGAGGAAGAGATGGCATGTGCACGCTTCAGGAGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis