Browse Element(s) Details


Os.18456.2.S1_x_at

Description gb:AK068908.1
DB_XREF= gi:32978933
TID=Os.18456.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003C02, full insert sequence.
FL= gb:AK068908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3138011/11Initiation factor 2 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31350Os.8856.1.S1_at11/1112+18827079..18832070SSXT protein containing protein, expressed
LOC_Os12g31360NANA12+18839838..18840204hypothetical protein
LOC_Os12g31370Os.19630.1.S1_at11/1112+18847550..18850637DNA repair protein RAD51 homolog B, putative, expressed
LOC_Os12g31380Os.18456.2.S1_x_at11/1112+18850839..18853828Initiation factor 2 subunit family protein, expressed
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18456.2.S1_x_at--335--8251Chr12:18851570..18851594 (25 bp)
GGCACTTATCAGATAGCTCTCGTCG
LOC_Os12g31380
Os.18456.2.S1_x_at--547--3771Chr12:18851554..18851578 (25 bp)
CTCTCGTCGCTCACAGTATGAACAA
LOC_Os12g31380
Os.18456.2.S1_x_at--813--2371Chr12:18851531..18851555 (25 bp)
AAACCTGTTTATGTGGCTGCTGAAA
LOC_Os12g31380
Os.18456.2.S1_x_at--33--1211Chr12:18851250..18851274 (25 bp)
AGTTTGCACGCCTATATCCGTTGGA
LOC_Os12g31380
Os.18456.2.S1_x_at--930--1571Chr12:18851207..18851231 (25 bp)
AGCTCACCGACCCATTGATTTTGGA
LOC_Os12g31380
Os.18456.2.S1_x_at--433--10871Chr12:18851187..18851211 (25 bp)
TTGGAGTTCCAATTCCGGCTGGTGT
LOC_Os12g31380
Os.18456.2.S1_x_at--659--10591Chr12:18851109..18851133 (25 bp)
TTCTGACTGATCTCGGTGTTCTGAC
LOC_Os12g31380
Os.18456.2.S1_x_at--1047--7411Chr12:18851094..18851118 (25 bp)
GTGTTCTGACACCATCTGTTGTGAG
LOC_Os12g31380
Os.18456.2.S1_x_at--1030--7371Chr12:18851074..18851098 (25 bp)
GTGAGCGATGAGCTTATCCAACTAT
LOC_Os12g31380
Os.18456.2.S1_x_at--171--10311Chr12:18850990..18851014 (25 bp)
TTTCCCTGTCAGTTTTTTGCTATGT
LOC_Os12g31380
Os.18456.2.S1_x_at--999--6631Chr12:18850967..18850991 (25 bp)
GTTGTATTTGCCCTTTACGTGGATG
LOC_Os12g31380
Target Sequence 
GGCACTTATCAGATAGCTCTCGTCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGTTTGCACG
CCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGACCCATTGATTTTGGAGTTCCAATTCCGGCTGGTGTGG
AGGTTGANACTTCAGCGAGAGACTACACTCCTCCCCAGTATCTNACGCTGCTTCTGACTGATCTCGGTGTTCTGACACCA
TCTGTTGTGAGCGATGAGCTTATCCAACTATACCTATGATCACTGGTACGGAGATATGATGTACCGATGTACNGCCGTGG
AATCTAAGGTTTTCCCTGTCAGTTTTTTGCTATGTTGTATTTGCCCTTTACGTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18456.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis