Browse Element(s) Details


Os.18478.1.S1_at

Description gb:AK121489.1
DB_XREF= gi:37991112
TID=Os.18478.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150L05, full insert sequence.
FL= gb:AK058948.1 gb:AK121489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0821010/11SET domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08190Os.6771.1.S1_s_at11/118+4666057..4669028expressed protein
LOC_Os08g08190Os.54967.1.S1_at1/118+4666057..4669028expressed protein
LOC_Os08g08200Os.21877.1.S1_at11/118+4669948..4674157mRNA capping enzyme, large subunit family protein, expressed
LOC_Os08g08210Os.18478.1.S1_at10/118+4684772..4690386SET domain-containing protein, putative, expressed
LOC_Os08g08220Os.33780.1.S1_a_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08220Os.33780.2.S1_x_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08230NANA8+4702894..4703865Kinesin, putative, expressed
LOC_Os08g08240NANA8+4706637..4710786hAT family dimerisation domain containing protein, expressed
LOC_Os08g08250OsAffx.29098.1.S1_at11/118+4712480..4712787hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18478.1.S1_at--962--2931Chr08:4689813..4689837 (25 bp)
AAGGCCATGGCCCAAGGACCGGATA
LOC_Os08g08210
Os.18478.1.S1_at--436--2791Chr08:4689939..4689963 (25 bp)
AAGATCCAACGTCTTCCTAGGCTAG
LOC_Os08g08210
Os.18478.1.S1_at--156--7112Chr08:4690014..4690038 (25 bp)
GTCAGACACCATTCTTTTTTCTTCC
LOC_Os08g08210
Os.18478.1.S1_at--482--8271Chr08:4690084..4690108 (25 bp)
GGCAGGGTAACAACAGTCTCTCTCA
LOC_Os08g08210
Os.18478.1.S1_at--409--9251Chr08:4690132..4690156 (25 bp)
TCCTCCCCTTACCTTGTAGAGATGT
LOC_Os08g08210
Os.18478.1.S1_at--567--8811Chr08:4690186..4690210 (25 bp)
TGATTTAATGTAGCGCCTTTTCCCG
LOC_Os08g08210
Os.18478.1.S1_at--724--10371Chr08:4690203..4690227 (25 bp)
TTTTCCCGTTGCGTAGAATTGTCAC
LOC_Os08g08210
Os.18478.1.S1_at--1069--5191Chr08:4690218..4690242 (25 bp)
GAATTGTCACCTCCCAATGTGCAAT
LOC_Os08g08210
Os.18478.1.S1_at--1030--1091Chr08:4690313..4690337 (25 bp)
AGTGGACGTTGCATTTCTGTTGCTC
LOC_Os08g08210
Os.18478.1.S1_at--838--9471Chr08:4690328..4690352 (25 bp)
TCTGTTGCTCAGTTTCGAGCTGTTT
LOC_Os08g08210
Os.18478.1.S1_at--825--5871NONE
GAGCTGTTTGACCTAATACCGTTTC
NONE
Target Sequence 
AAGGCCATGGCCCAAGGACCGGATATGGGNTTTCAAGAGTGACCCAAGATTCTTTGGTACTCCAATGATGGATGCCGTAT
TGAATAATTCCCCCCTTGACAAGGAGATGNTGCATTGGCTCAAGACAAGATCCAACGTCTTCCTAGGCTAGCCAAGGAAT
TGTAGGCAGAGGGTATTGGTTTTTTTCCTTTGGAGATTTTAGTCAGACACCATTCTTTTTTCTTCCTACTCACACCTTTC
CTACCTAATCATGGGGATTTAGCTTTTAGATGGCAGGGTAACAACAGTCTCTCTCACCTTCCCCATTTGTACAGCCCCCT
CCTCCCCTTACCTTGTAGAGATGTGTTCCATTATTAACTGATAGATCCATCATTGATTTAATGTAGCGCCTTTTCCCGTT
GCGTAGAATTGTCACCTCCCAATGTGCAATGTGGATATTCATGTGTAAATGCAAAACAGTAGCAATCTTAAATNCCAGTG
ATATGTTACAGATTGTAGGAAGTGGACGTTGCATTTCTGTTGCTCAGTTTCGAGCTGTTTGACCTAATACCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis