Browse Element(s) Details

Os.21877.1.S1_at

Description

gb:AK103587.1
DB_XREF= gi:32988796
TID=Os.21877.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.21877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133C03, full insert sequence.
FL= gb:AK063927.1 gb:AK103587.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g08200	11/11	mRNA capping enzyme, large subunit family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g08170	Os.26818.2.S1_at	1/11	8	+	4642555..4646046	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	OsAffx.10637.3.S1_s_at	11/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	OsAffx.10637.1.S1_s_at	11/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	OsAffx.10637.4.S1_s_at	11/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	Os.33878.1.S1_at	6/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08180	Os.27102.1.S1_x_at	1/11	8	+	4650960..4653671	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08190	Os.6771.1.S1_s_at	11/11	8	+	4666057..4669028	expressed protein
LOC_Os08g08190	Os.54967.1.S1_at	1/11	8	+	4666057..4669028	expressed protein
LOC_Os08g08200	Os.21877.1.S1_at	11/11	8	+	4669948..4674157	mRNA capping enzyme, large subunit family protein, expressed
LOC_Os08g08210	Os.18478.1.S1_at	10/11	8	+	4684772..4690386	SET domain-containing protein, putative, expressed
LOC_Os08g08220	Os.33780.1.S1_a_at	11/11	8	+	4694324..4702018	SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08220	Os.33780.2.S1_x_at	11/11	8	+	4694324..4702018	SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006370	biological_process	mRNA capping
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.21877.1.S1_at--884--497	1	Chr08:4671500..4671524 (25 bp)	GCATCCAGACCTTTCGGTATCAAAT	LOC_Os08g08200
Os.21877.1.S1_at--855--61	1	Chr08:4670834..4670858 (25 bp)	ATGCTGTTGATTGCCCGGAATGGGT	LOC_Os08g08200
Os.21877.1.S1_at--642--923	1	Chr08:4670806..4670830 (25 bp)	TCCATTCCATCTCTTCAAATTGCTG	LOC_Os08g08200
Os.21877.1.S1_at--42--237	1	Chr08:4670516..4670540 (25 bp)	AAAGCCAGAGTTTGCTGAGCTCATG	LOC_Os08g08200
Os.21877.1.S1_at--254--369	1	Chr08:4670338..4670362 (25 bp)	CTATCTCTACCTCGCATTTGTTTTG	LOC_Os08g08200
Os.21877.1.S1_at--875--19	1	Chr08:4670243..4670347 (25 bp)	ATTTGTTTTGCGCAAGAGAGGCCAA	LOC_Os08g08200
Os.21877.1.S1_at--379--891	1	Chr08:4670165..4670189 (25 bp)	TGAGAACGACATCGATTTCCTTGGG	LOC_Os08g08200
Os.21877.1.S1_at--872--591	1	Chr08:4670113..4670137 (25 bp)	GAGCTTACTAACAACTTACCGATTC	LOC_Os08g08200
Os.21877.1.S1_at--420--1047	1	Chr08:4670098..4670122 (25 bp)	TTACCGATTCAATGCTTCATACAGC	LOC_Os08g08200
Os.21877.1.S1_at--1159--681	1	Chr08:4670056..4670080 (25 bp)	GTACCTTTAGTAGCTCACCAGTTAT	LOC_Os08g08200
Os.21877.1.S1_at--613--121	1	Chr08:4670037..4670061 (25 bp)	AGTTATTCCTCGAAGCTGTACCTGT	LOC_Os08g08200

Target Sequence

GCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGGATGCTGTTGATTGCCCGGAATGGGTTGTTCCATTCCA
TCTCTTCAAATTGCTGGCAGAGGAGTATGACCTGGAGTTGGTTCTGACGAAAAACTTCCATGAATTTGTACACGAGTACT
TGCAAAAGCCAGAGTTTGCTGAGCTCATGCGGAGGCTGGGTGCCCTAGGTGATGGAAGGCAGGACCAAAGTACACTGTCA
CAGGATGAATGGGAGGTAGCCTATCTCTACCTCGCATTTGTTTTGCGCAAGAGAGGCCAACCCCCCTCCCAGCGGAGGGC
CAACAATGCAAACAGAGGAAAGATGTTTCTCACTGAGAACGACATCGATTTCCTTGGGGTATAAAGCAAACAGAACTGTA
CTCTAGAGCTTACTAACAACTTACCGATTCAATGCTTCATACAGCATAAAAAGAAGAAAGTTGTACCTTTAGTAGCTCAC
CAGTTATTCCTCGAAGCTGTACCTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis