Browse Element(s) Details


Os.33780.2.S1_x_at

Description gb:AK098970.1
DB_XREF= gi:32984179
TID=Os.33780.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088O13, full insert sequence.
FL= gb:AK070470.1 gb:AK098970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0822011/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08200Os.21877.1.S1_at11/118+4669948..4674157mRNA capping enzyme, large subunit family protein, expressed
LOC_Os08g08210Os.18478.1.S1_at10/118+4684772..4690386SET domain-containing protein, putative, expressed
LOC_Os08g08220Os.33780.1.S1_a_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08220Os.33780.2.S1_x_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08230NANA8+4702894..4703865Kinesin, putative, expressed
LOC_Os08g08240NANA8+4706637..4710786hAT family dimerisation domain containing protein, expressed
LOC_Os08g08250OsAffx.29098.1.S1_at11/118+4712480..4712787hypothetical protein
LOC_Os08g08260OsAffx.5747.1.S1_at11/118+4721424..4722716hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33780.2.S1_x_at--571--6171Chr08:4697411..4697435 (25 bp)
GAGGATCCAGCAGTCTAAGTTTATG
LOC_Os08g08220
Os.33780.2.S1_x_at--114--6211Chr08:4697490..4697514 (25 bp)
GAGGCAGCGCCTGTTGCGGATAATA
LOC_Os08g08220
Os.33780.2.S1_x_at--292--7951Chr08:4697549..4697573 (25 bp)
GGATCTAGGAGCTGGTTCGTCATCA
LOC_Os08g08220
Os.33780.2.S1_x_at--1109--7891Chr08:4697562..4697586 (25 bp)
GGTTCGTCATCAACAGCAGCTGGTA
LOC_Os08g08220
Os.33780.2.S1_x_at--936--3371Chr08:4697578..4697602 (25 bp)
CAGCTGGTACTGGTGACGTTGAAAC
LOC_Os08g08220
Os.33780.2.S1_x_at--223--5771Chr08:4697592..4697616 (25 bp)
GACGTTGAAACATGTGCTAGCCTAA
LOC_Os08g08220
Os.33780.2.S1_x_at--235--7071Chr08:4697671..4697695 (25 bp)
GTAAGGCAAGCACATCATCTACTAT
LOC_Os08g08220
Os.33780.2.S1_x_at--679--3031Chr08:4697698..4697722 (25 bp)
AATCCATGACAAGGCCTGCTGCAGG
LOC_Os08g08220
Os.33780.2.S1_x_at--1010--5011Chr08:4697718..4697742 (25 bp)
GCAGGTACTCTAGTGGTGTGCCCAG
LOC_Os08g08220
Os.33780.2.S1_x_at--1054--7451Chr08:4697733..4697757 (25 bp)
GTGTGCCCAGCTAGTGTTCTTAAGC
LOC_Os08g08220
Os.33780.2.S1_x_at--113--8791Chr08:4697807..4697831 (25 bp)
TGTTTTGGTCTATCATGGTGGCTCA
LOC_Os08g08220
Target Sequence 
GAGGATCCAGCAGTCTAAGTTTATGTCTGTTGATTCAGATCGTTTAAAAGCTGAAGCGCTAAACCTTGATGATGACGATG
AGGCAGCGCCTGTTGCGGATAATAAGGGGGAGCAGACTAAGAATGATGAACCCAGGAAGGATCTAGGAGCTGGTTCGTCA
TCAACAGCAGCTGGTACTGGTGACGTTGAAACATGTGCTAGCCTAATGAATACTGCTCCAGATAAGACGGTTGAAAGAAA
TGTTGAACGTAAGAAGAAGAGTAAGGCAAGCACATCATCTACTATGCAATCCATGACAAGGCCTGCTGCAGGTACTCTAG
TGGTGTGCCCAGCTAGTGTTCTTAAGCAATGGGCGAACGAATTGACTGACAAGGTTGGTGAAAGTGCTAAATTGTCTGTT
TTGGTCTATCATGGTGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33780.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis