Browse Element(s) Details


OsAffx.5747.1.S1_at

Description tigr:9636.m00776
TID=OsAffx.5747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0826011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08220Os.33780.1.S1_a_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08220Os.33780.2.S1_x_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08230NANA8+4702894..4703865Kinesin, putative, expressed
LOC_Os08g08240NANA8+4706637..4710786hAT family dimerisation domain containing protein, expressed
LOC_Os08g08250OsAffx.29098.1.S1_at11/118+4712480..4712787hypothetical protein
LOC_Os08g08260OsAffx.5747.1.S1_at11/118+4721424..4722716hypothetical protein
LOC_Os08g08270OsAffx.16894.1.S1_at11/118+4738062..4738325hypothetical protein
LOC_Os08g08279NANA8+4740883..4741286NA
LOC_Os08g08290OsAffx.5748.1.S1_at10/118+4744681..4747342hypothetical protein
LOC_Os08g08290OsAffx.12155.2.A1_at2/118+4744681..4747342hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5747.1.S1_at--977--8411Chr08:4722606..4722630 (25 bp)
GGCCGTGCTGCTTCTTTGTGCCGCG
LOC_Os08g08260
OsAffx.5747.1.S1_at--737--9091Chr08:4722601..4722625 (25 bp)
TGCTGCTTCTTTGTGCCGCGTTCCA
LOC_Os08g08260
OsAffx.5747.1.S1_at--1095--10231Chr08:4722592..4722616 (25 bp)
TTTGTGCCGCGTTCCACGCAGGCAT
LOC_Os08g08260
OsAffx.5747.1.S1_at--1136--10671Chr08:4722581..4722605 (25 bp)
TTCCACGCAGGCATGGCGCTCATTA
LOC_Os08g08260
OsAffx.5747.1.S1_at--586--5011Chr08:4722575..4722599 (25 bp)
GCAGGCATGGCGCTCATTATCAACG
LOC_Os08g08260
OsAffx.5747.1.S1_at--515--911Chr08:4722573..4722597 (25 bp)
AGGCATGGCGCTCATTATCAACGGC
LOC_Os08g08260
OsAffx.5747.1.S1_at--162--871Chr08:4722569..4722593 (25 bp)
ATGGCGCTCATTATCAACGGCGTTC
LOC_Os08g08260
OsAffx.5747.1.S1_at--687--4131Chr08:4722565..4722589 (25 bp)
CGCTCATTATCAACGGCGTTCGACG
LOC_Os08g08260
OsAffx.5747.1.S1_at--557--4091Chr08:4722058..4722569 (25 bp)
CGACGCGGACGAGAGAATGAGAATA
LOC_Os08g08260
OsAffx.5747.1.S1_at--768--2551Chr08:4722034..4722058 (25 bp)
AACTGTAAAATTTGTCTATCAGGGA
LOC_Os08g08260
OsAffx.5747.1.S1_at--215--6531Chr08:4721736..4721760 (25 bp)
GATTTACATGAAGTACTTTACAAGG
LOC_Os08g08260
Target Sequence 
GGCCGTGCTGCTTCTTTGTGCCGCGTTCCACGCAGGCATGGCGCTCATTATCAACGGCGTTCGACGCGGACGAGAGAATG
AGAATAACTGTAAAATTTGTCTATCAGGGAAATTAAATAAATATGACATGAGAGGAAAAGATTTACATGAAGTACTTTAC
AAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis