Browse Element(s) Details


OsAffx.12155.2.A1_at

Description tigr:9630.m02128
TID=OsAffx.12155.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2212011/11hypothetical protein
LOC_Os08g082902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22110OsAffx.12154.1.S1_at9/112+13164480..13164761hypothetical protein
LOC_Os02g22120OsAffx.12155.2.A1_at11/112+13169859..13171845hypothetical protein
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein
LOC_Os02g22140Os.11794.1.S1_at11/112+13179015..13184649ADP-ribosylation factor At2g18390, putative, expressed
LOC_Os02g22150NANA2+13185548..13186233hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12155.2.A1_at--386--7632Chr08:21666874..21666898 (25 bp)
GGGACCTTAGCATGGGTGACATCAT
NONE
OsAffx.12155.2.A1_at--158--7372Chr08:21666889..21666913 (25 bp)
GTGACATCATAATACGAATCCCCGG
NONE
OsAffx.12155.2.A1_at--800--5832Chr08:21666915..21666939 (25 bp)
GACCTCACCATTGTTACCATAGTTG
NONE
OsAffx.12155.2.A1_at--258--1712Chr08:21666930..21666954 (25 bp)
ACCATAGTTGGTTTTGACCGCTTTG
NONE
OsAffx.12155.2.A1_at--1036--10752Chr08:21666943..21666967 (25 bp)
TTGACCGCTTTGTTGTTGAATGCTT
NONE
OsAffx.12155.2.A1_at--621--2971Chr02:13170691..13170715 (25 bp)
AATGCTTTAGTTGTTTCGATGTTGG
LOC_Os02g22120
OsAffx.12155.2.A1_at--912--131Chr02:13170719..13170743 (25 bp)
ATTACGATTTGCTTTGGCCCTCGAG
LOC_Os02g22120
OsAffx.12155.2.A1_at--854--4954Chr08:21667626..21667650 (25 bp)
GCATATCACATATTTACATCCCAGG
NONE
OsAffx.12155.2.A1_at--854--9314Chr08:21667644..21667668 (25 bp)
TCCCAGGTGACCATCAAGCATGTTA
NONE
OsAffx.12155.2.A1_at--466--2012Chr08:21667904..21667928 (25 bp)
ACTCACCTGTGTAGATGTCGACGGG
NONE
OsAffx.12155.2.A1_at--256--2591Chr02:13171585..13171609 (25 bp)
AACGATGAATGCACCACCATGACCG
LOC_Os02g22120
Target Sequence 
GGGACCTTAGCATGGGTGACATCATAATACGAATCCCCGGAGACCTCACCATTGTTACCATAGTTGGTTTTGACCGCTTT
GTTGTTGAATGCTTTAGTTGTTTCGATGTTGGGGCATTACGATTTGCTTTGGCCCTCGAGAGGAAAAAGAAGCAGGCATA
TCACATATTTACATCCCAGGTGACCATCAAGCATGTTATGGAAAGAATTCAAGAACTCACCTGTGTAGATGTCGACGGGA
TTGAAGCAGAAGCTAGTATAGCACCACCCACAGAAAATGACAGAACGGGCGGAGTGGGTGCGACGAGCAACGATGAATGC
ACCACCATGACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12155.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis