Browse Element(s) Details


Os.8901.1.S2_at

Description gb:AK073631.1
DB_XREF= gi:32983654
TID=Os.8901.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052D22, full insert sequence.
FL= gb:AK073631.1 gb:AK104165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2213011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22110OsAffx.12154.1.S1_at9/112+13164480..13164761hypothetical protein
LOC_Os02g22120OsAffx.12155.2.A1_at11/112+13169859..13171845hypothetical protein
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein
LOC_Os02g22140Os.11794.1.S1_at11/112+13179015..13184649ADP-ribosylation factor At2g18390, putative, expressed
LOC_Os02g22150NANA2+13185548..13186233hypothetical protein
LOC_Os02g22160Os.8802.1.S1_at11/112+13200804..13203747expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8901.1.S2_at--1104--8571Chr02:13175651..13175675 (25 bp)
TGGTACCCAATAGACAGAACTGCCT
LOC_Os02g22130
Os.8901.1.S2_at--140--5391Chr02:13175715..13175739 (25 bp)
GAAGCAAGACGTGGTTCTCAGACTA
LOC_Os02g22130
Os.8901.1.S2_at--58--5911Chr02:13175764..13175788 (25 bp)
GAGCTCCAGCTTCAGTGGGTCGACA
LOC_Os02g22130
Os.8901.1.S2_at--983--7431Chr02:13175781..13175805 (25 bp)
GGTCGACATCCCAGGTTCTAAGGGT
LOC_Os02g22130
Os.8901.1.S2_at--577--10131Chr02:13175807..13175831 (25 bp)
TATGAACTCTGTACTCTGCCTATTG
LOC_Os02g22130
Os.8901.1.S2_at--748--9051Chr02:13175830..13175854 (25 bp)
TGCTTACAGTCTTGCATAGCTCGCA
LOC_Os02g22130
Os.8901.1.S2_at--272--10011Chr02:13175846..13175870 (25 bp)
TAGCTCGCAAGTCCAACTCTAAGTT
LOC_Os02g22130
Os.8901.1.S2_at--110--6311Chr02:13175907..13175931 (25 bp)
GATGAGATTCTTTTACTGTCCTTGA
LOC_Os02g22130
Os.8901.1.S2_at--129--1211Chr02:13176062..13176086 (25 bp)
AGTTTGGTGTTACCCTGTCTGTAGA
LOC_Os02g22130
Os.8901.1.S2_at--521--9471Chr02:13176127..13176151 (25 bp)
TCTGTCTTTCTTCTTGTACGCCAAA
LOC_Os02g22130
Os.8901.1.S2_at--386--6991Chr02:13176142..13176166 (25 bp)
GTACGCCAAAGACCAATGCTATCTG
LOC_Os02g22130
Target Sequence 
TGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTGAGGGGAAGGTGAAGCAAGACGTGGTT
CTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCTCCAGCTTCAGTGGGTCGACATCCCAGGTTCTAAGGGTGTATG
AACTCTGTACTCTGCCTATTGCTTACAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCAGTGGACAATCAAATA
AGCAACAGCTTATATTGATGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAATGGCTGTAA
AATCATTCTTATGTTGACACAGCAAGTGTCTCGAAGATCCCCCACTAGGTGTTTGGGCAGAGCAAAGTTGTACAATATGT
CTGCAAAGTATAGTTTGGTGTTACCCTGTCTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGTCTG
TCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8901.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis