Browse Element(s) Details


OsAffx.12154.1.S1_at

Description tigr:9630.m02127
TID=OsAffx.12154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g221109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22110OsAffx.12154.1.S1_at9/112+13164480..13164761hypothetical protein
LOC_Os02g22120OsAffx.12155.2.A1_at11/112+13169859..13171845hypothetical protein
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein
LOC_Os02g22140Os.11794.1.S1_at11/112+13179015..13184649ADP-ribosylation factor At2g18390, putative, expressed
LOC_Os02g22150NANA2+13185548..13186233hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12154.1.S1_at--942--5031Chr02:13164704..13164728 (25 bp)
GCAGATGCAGAAGGACGCTATGAAG
LOC_Os02g22110
OsAffx.12154.1.S1_at--945--5271Chr02:13164695..13164719 (25 bp)
GAAGGACGCTATGAAGCAAACCCAA
LOC_Os02g22110
OsAffx.12154.1.S1_at--72--1851Chr02:13164690..13164714 (25 bp)
ACGCTATGAAGCAAACCCAAATGGG
LOC_Os02g22110
OsAffx.12154.1.S1_at--103--7571Chr02:13164619..13164691 (25 bp)
GGGCCTCGATAGTTGGAAATCCACC
LOC_Os02g22110
OsAffx.12154.1.S1_at--701--6491NONE
GATAGTTGGAAATCCACCTCCGATG
NONE
OsAffx.12154.1.S1_at--184--8531Chr02:13164606..13164678 (25 bp)
TGGAAATCCACCTCCGATGACAAAG
LOC_Os02g22110
OsAffx.12154.1.S1_at--197--2271NONE
AAATCCACCTCCGATGACAAAGGAG
NONE
OsAffx.12154.1.S1_at--1026--2911Chr02:13164584..13164608 (25 bp)
AAGGAGGTCAACGTTCTTGTGGATG
LOC_Os02g22110
OsAffx.12154.1.S1_at--1162--5371Chr02:13164549..13164573 (25 bp)
GAAGAAGACGATAGCCGGCACAACC
LOC_Os02g22110
OsAffx.12154.1.S1_at--778--9991Chr02:13164538..13164562 (25 bp)
TAGCCGGCACAACCCGCTACAAGAA
LOC_Os02g22110
OsAffx.12154.1.S1_at--318--2631Chr02:13164512..13164536 (25 bp)
AACCTGCTGCTCTTCCAGTTGATGA
LOC_Os02g22110
Target Sequence 
GCAGATGCAGAAGGACGCTATGAAGCAAACCCAAATGGGGCCTCGATAGTTGGAAATCCACCTCCGATGACAAAGGAGGT
CAACGTTCTTGTGGATGTATTGCTGGAGAAGAAGACGATAGCCGGCACAACCCGCTACAAGAAGAACCTGCTGCTCTTCC
AGTTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis