Browse Element(s) Details


Os.18490.3.S1_at

Description gb:AK064949.1
DB_XREF= gi:32974967
TID=Os.18490.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative thiamin biosynthesis protein (OSJNBa0067E01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P20, full insert sequence.
FL= gb:AK064949.1 gb:AK062075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g476107/11Thiamine biosynthesis protein thiC, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47590Os.28943.1.S1_x_at2/113+26883866..26887103retrotransposon protein, putative, unclassified
LOC_Os03g47600NANA3+26887719..26894493retrotransposon protein, putative, unclassified
LOC_Os03g47604NANA3+26898949..26899639NA
LOC_Os03g47610Os.18490.3.S1_at7/113+26901226..26906905Thiamine biosynthesis protein thiC, putative, expressed
LOC_Os03g47614Os.33602.1.S1_at7/113+26910065..26910663hypothetical protein
LOC_Os03g47620Os.45041.1.S1_x_at11/113+26911878..26919392TPR Domain containing protein
LOC_Os03g47629NANA3+26920979..26921203hypothetical protein
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18490.3.S1_at--76--351Chr03:26906699..26906723 (25 bp)
ATACAATCTCCGTGCAGATCGTCTT
LOC_Os03g47610
Os.18490.3.S1_at--415--7471Chr03:26906787..26906811 (25 bp)
GTGGTAAGCAGTATAAGTGCCTTGA
LOC_Os03g47610
Os.18490.3.S1_at--851--7271Chr03:26906803..26906827 (25 bp)
GTGCCTTGAATAAAGCTGGTGTTGC
LOC_Os03g47610
Os.18490.3.S1_at--202--4731Chr03:26906817..26906841 (25 bp)
GCTGGTGTTGCTTAGCTCAATTTGT
LOC_Os03g47610
Os.18490.3.S1_at--732--10251Chr03:26906837..26906861 (25 bp)
TTTGTTAATTCTGTCGTGGCTTGTA
LOC_Os03g47610
Os.18490.3.S1_at--188--10611Chr03:26906845..26906869 (25 bp)
TTCTGTCGTGGCTTGTAATAAAATT
LOC_Os03g47610
Os.18490.3.S1_at--368--2391Chr03:26906870..26906894 (25 bp)
AAACTCTATATGTGATCCTTCCGTG
LOC_Os03g47610
Os.18490.3.S1_at--173--6371Chr03:26906883..26906907 (25 bp)
GATCCTTCCGTGTCATATTTTCTAC
NONE
Os.18490.3.S1_at--810--171Chr03:26906899..26906923 (25 bp)
ATTTTCTACTCTTTGCATCACTGTG
NONE
Os.18490.3.S1_at--299--4971Chr03:26906913..26906937 (25 bp)
GCATCACTGTGGGTTGTTAGTAATG
NONE
Os.18490.3.S1_at--495--6751NONE
GTTAGTAATGAAAGTTGCCCCAGGG
NONE
Target Sequence 
ATACAATCTCCGTGCAGATCGTCTTGGTGTCCATCTACTCCGGGTGGAGCGTTTATCAGCAGCACTCCTCACCATCCTAT
GTTAGGAGGTGGTAAGCAGTATAAGTGCCTTGAATAAAGCTGGTGTTGCTTAGCTCAATTTGTTAATTCTGTCGTGGCTT
GTAATAAAATTAAACTCTATATGTGATCCTTCCGTGTCATATTTTCTACTCTTTGCATCACTGTGGGTTGTTAGTAATGA
AAGTTGCCCCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18490.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis