Browse Element(s) Details


Os.185.1.S1_a_at

Description gb:L27821.1
DB_XREF= gi:450299
TID=Os.185.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.185 (NCBI UniGene Cluster)
DEF=Oryza sativa protein kinase (OSPK10) mRNA, complete cds.
PROD=protein kinase
FL= gb:AK121177.1 gb:L27821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2981011/11lectin protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29800OsAffx.27869.1.S1_at11/116+17141221..17143445pentatricopeptide, putative, expressed
LOC_Os06g29804Os.6050.1.S1_a_at11/116+17155143..17158846expressed protein
LOC_Os06g29810Os.185.1.S1_a_at11/116+17159337..17163823lectin protein kinase family protein, putative, expressed
LOC_Os06g29820NANA6+17186524..17188320retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.185.1.S1_a_at--151--4991Chr06:17159835..17159859 (25 bp)
GCATCCAGGATGATTTCTACCAGAG
LOC_Os06g29810
Os.185.1.S1_a_at--710--10811Chr06:17159793..17159817 (25 bp)
TTGTGCAGATGCTCGAAGGCGTCTG
LOC_Os06g29810
Os.185.1.S1_a_at--738--1271Chr06:17159739..17159763 (25 bp)
AGATCGGGTACAGGCTCTACGCAAA
LOC_Os06g29810
Os.185.1.S1_a_at--74--9951Chr06:17159722..17159746 (25 bp)
TACGCAAACGCCTTCAAATCGAGCA
LOC_Os06g29810
Os.185.1.S1_a_at--933--2491Chr06:17159662..17159686 (25 bp)
AACAGTGATGCTCTGCTTTCAGCTG
LOC_Os06g29810
Os.185.1.S1_a_at--1058--1611Chr06:17159642..17159666 (25 bp)
AGCTGTGAGGCTTTCTGGTCCCAGA
LOC_Os06g29810
Os.185.1.S1_a_at--622--2731Chr06:17159610..17159634 (25 bp)
AAGAATCCCATGTACAGTGCCTTGT
LOC_Os06g29810
Os.185.1.S1_a_at--707--1131Chr06:17159595..17159619 (25 bp)
AGTGCCTTGTCTAGTTAGGTTGCAA
LOC_Os06g29810
Os.185.1.S1_a_at--1148--3451Chr06:17159545..17159569 (25 bp)
CAGTGTTTTGGTGATCATTTGCTTC
LOC_Os06g29810
Os.185.1.S1_a_at--513--6431Chr06:17159533..17159557 (25 bp)
GATCATTTGCTTCACACTATTGTAC
LOC_Os06g29810
Os.185.1.S1_a_at--104--7031Chr06:17159512..17159536 (25 bp)
GTACATATCTTCTTGGTCATTTCTG
LOC_Os06g29810
Target Sequence 
GCATCCAGGATGATTTCTACCAGAGACCATCCATGTCAAAGGTTGTGCAGATGCTCGAAGGCGTCTGCGAGGTGCTCCAG
CCACCGGTGTCGTCGCAGATCGGGTACAGGCTCTACGCAAACGCCTTCAAATCGAGCAGCGAGGAGGGGACTTCATCAGG
GATGTCGGACTACAACAGTGATGCTCTGCTTTCAGCTGTGAGGCTTTCTGGTCCCAGATGATGTGAAGAATCCCATGTAC
AGTGCCTTGTCTAGTTAGGTTGCAAAGTGTGCAAATTTTGCTGTAGTTTCCAGTGTTTTGGTGATCATTTGCTTCACACT
ATTGTACATATCTTCTTGGTCATTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.185.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis