Browse Element(s) Details


OsAffx.27869.1.S1_at

Description tigr:9634.m02860
TID=OsAffx.27869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2980011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29790Os.52435.1.S1_at10/116+17129112..17133976EXS family protein, expressed
LOC_Os06g29800OsAffx.27869.1.S1_at11/116+17141221..17143445pentatricopeptide, putative, expressed
LOC_Os06g29804Os.6050.1.S1_a_at11/116+17155143..17158846expressed protein
LOC_Os06g29810Os.185.1.S1_a_at11/116+17159337..17163823lectin protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27869.1.S1_at--192--3311Chr06:17141764..17141788 (25 bp)
CACAAGTTTTTCTCAGCATGGCAAT
LOC_Os06g29800
OsAffx.27869.1.S1_at--929--8251Chr06:17141734..17141758 (25 bp)
GGCAGCCATTCAGCTATTTGATATG
LOC_Os06g29800
OsAffx.27869.1.S1_at--1142--8111Chr06:17141667..17141691 (25 bp)
GGACTATTGTCGTCTTGTAGCCGAA
LOC_Os06g29800
OsAffx.27869.1.S1_at--352--5851Chr06:17141599..17141623 (25 bp)
GACCAAGTACAATCTGGAGCCCAAG
LOC_Os06g29800
OsAffx.27869.1.S1_at--211--5011Chr06:17141558..17141582 (25 bp)
GCATGGTTGATCTATTTGCCCGTGC
LOC_Os06g29800
OsAffx.27869.1.S1_at--80--10211Chr06:17141546..17141570 (25 bp)
TATTTGCCCGTGCTGGAAGATTTTC
LOC_Os06g29800
OsAffx.27869.1.S1_at--1051--8951Chr06:17141513..17141537 (25 bp)
TGAAATTCATTGATGCCATGCCTTG
LOC_Os06g29800
OsAffx.27869.1.S1_at--249--2571Chr06:17141477..17141501 (25 bp)
AACTGGTGTGGGAAGCTTTGCTAGC
LOC_Os06g29800
OsAffx.27869.1.S1_at--1038--4851Chr06:17141458..17141482 (25 bp)
GCTAGCTTCATGTAGGGTTCACGGT
LOC_Os06g29800
OsAffx.27869.1.S1_at--772--4351Chr06:17141385..17141409 (25 bp)
CCAGAGGATCCTTCACCATATATTA
LOC_Os06g29800
OsAffx.27869.1.S1_at--917--4531Chr06:17141316..17141340 (25 bp)
GCCCGGAATCGAACTTTATTAGACT
LOC_Os06g29800
Target Sequence 
CACAAGTTTTTCTCAGCATGGCAATGAGGTGGCAGCCATTCAGCTATTTGATATGATGCAAGAAGAAATGGTGTGTCCTG
ATGATTATACTTTTGTCGGACTATTGTCGTCTTGTAGCCGAATGGGCCTAGTTGCAGAGGGTTGTGAATACTTCAAACAG
ATGAAGACCAAGTACAATCTGGAGCCCAAGATGGAACATTACACATGCATGGTTGATCTATTTGCCCGTGCTGGAAGATT
TTCTGATGCGATGAAATTCATTGATGCCATGCCTTGTCAACCAGACCAACTGGTGTGGGAAGCTTTGCTAGCTTCATGTA
GGGTTCACGGTAATTTGGATTTAGGAAGAATGGCAGCAAAGAAGATTCTGGAAATTAAACCAGAGGATCCTTCACCATAT
ATTATATTATCCAGCATTCATGCTTCAATTGATATGTGGGATGAAAAAGCCCGGAATCGAACTTTATTAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis