Browse Element(s) Details


Os.1853.1.S1_at

Description gb:AF042489.1
DB_XREF= gi:2801802
GEN=glp16
TID=Os.1853.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1853 (NCBI UniGene Cluster)
DEF=Oryza sativa germin-like protein 16 (glp16) mRNA, complete cds.
PROD=germin-like protein 16
FL= gb:AK062862.1 gb:AF042489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0896011/11Germin-like protein subfamily 1 member 14 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08920NANA8+5180531..5181354Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g08930OsAffx.16906.1.S1_at11/118+5187545..5187961hypothetical protein
LOC_Os08g08940NANA8+5189767..5193072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.47463.1.S1_x_at4/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08950Os.14491.2.S1_x_at3/118+5194673..5199735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08960Os.1853.1.S1_at11/118+5202045..5203162Germin-like protein subfamily 1 member 14 precursor, putative, expressed
LOC_Os08g08970Os.2210.1.S1_at11/118+5215876..5216960Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2209.1.S1_at11/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2321.1.S1_at1/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08990NANA8+5227520..5228375Germin-like protein subfamily 1 member 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1853.1.S1_at--1075--9951Chr08:5202539..5202563 (25 bp)
TACCCTTGGCATCTCGATAGCACGT
LOC_Os08g08960
Os.1853.1.S1_at--89--471Chr08:5202549..5202573 (25 bp)
ATCTCGATAGCACGTCTTGACTTTG
LOC_Os08g08960
Os.1853.1.S1_at--745--411Chr08:5202562..5202586 (25 bp)
GTCTTGACTTTGCACCCTTGGGTTT
LOC_Os08g08960
Os.1853.1.S1_at--162--3611Chr08:5202578..5202602 (25 bp)
CTTGGGTTTGAACCCACCACACACG
LOC_Os08g08960
Os.1853.1.S1_at--400--2611Chr08:5202614..5202638 (25 bp)
AACCGAGATCTTCACGGTGCTTGAA
LOC_Os08g08960
Os.1853.1.S1_at--579--951Chr08:5202638..5202662 (25 bp)
AGGAACACTCTACGTTGGCTTTGTT
LOC_Os08g08960
Os.1853.1.S1_at--430--9531Chr08:5202646..5202670 (25 bp)
TCTACGTTGGCTTTGTTACGTCCAA
LOC_Os08g08960
Os.1853.1.S1_at--995--10451Chr08:5202661..5202685 (25 bp)
TTACGTCCAACCCAGATAACAGGCT
LOC_Os08g08960
Os.1853.1.S1_at--548--2491Chr08:5202678..5202702 (25 bp)
AACAGGCTATTGTCCAAGGTGCTCA
LOC_Os08g08960
Os.1853.1.S1_at--420--10051Chr08:5202904..5202928 (25 bp)
TAGATTTGCTCCAAGCTCAGTTCTA
LOC_Os08g08960
Os.1853.1.S1_at--357--1971Chr08:5202940..5202964 (25 bp)
ACTGATTGTCCTGTTGGTTGCACCA
LOC_Os08g08960
Target Sequence 
TACCCTTGGCATCTCGATAGCACGTCTTGACTTTGCACCCTTGGGTTTGAACCCACCACACACGCACCCTCGTGCAACCG
AGATCTTCACGGTGCTTGAAGGAACACTCTACGTTGGCTTTGTTACGTCCAACCCAGATAACAGGCTATTGTCCAAGGTG
CTCAACAAGGGTGATGTGTTTTGTGTTCCCTGAGGGGCTCATCCACTTCCAGTTCAATCCTAACCCACACAAGCCGNCAG
TTGCCATTGCTGCACTGAGTAGCCANAAATCCCGGGGTTATTACTATTGCCAATNCGGTGTTTGGATCGAACCCACCTAT
CTCAGATGATATTTTGATGAAGGCGTTTCAGGTGGATAAGAAGATCATAGATTTGCTCCAAGCTCAGTTCTAGAAGAACA
ACTACTGATTGTCCTGTTGGTTGCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis