Browse Element(s) Details


Os.18663.1.S1_at

Description gb:AK072690.1
DB_XREF= gi:32982713
TID=Os.18663.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full insert sequence.
FL= gb:AK072690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3723011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37200OsAffx.18024.1.S1_x_at11/119+21463220..21464578Transferase family protein, expressed
LOC_Os09g37210NANA9+21473144..21476460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37220Os.47463.1.S1_x_at5/119+21479161..21482858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37220Os.14491.2.S1_x_at5/119+21479161..21482858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37230Os.18663.1.S1_at11/119+21487680..21494865protein kinase family protein, putative, expressed
LOC_Os09g37240OsAffx.6503.1.S1_at11/119+21496134..21514635Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os09g37250OsAffx.6504.1.S1_at10/119+21515372..21517140ARID/BRIGHT DNA binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18663.1.S1_at--329--5871Chr09:21494230..21494254 (25 bp)
GAGCCTGCTGAAAGACCAGATTTCT
LOC_Os09g37230
Os.18663.1.S1_at--1128--8631Chr09:21494405..21494429 (25 bp)
TGGGCGGACTATTTTCAGCTTTGAG
LOC_Os09g37230
Os.18663.1.S1_at--507--2331Chr09:21494493..21494517 (25 bp)
AAAGATCAGCGTCAGTTCCTTGGCA
LOC_Os09g37230
Os.18663.1.S1_at--705--7331Chr09:21494519..21494543 (25 bp)
GTGCAGCGCCACATTGAGATTAGAC
LOC_Os09g37230
Os.18663.1.S1_at--606--5711Chr09:21494541..21494565 (25 bp)
GACTGCTGCAGTCGACTTAATGAGC
LOC_Os09g37230
Os.18663.1.S1_at--1049--10811Chr09:21494617..21494641 (25 bp)
TTGGTGTACAACTTCCGGGTTCCAT
LOC_Os09g37230
Os.18663.1.S1_at--697--51Chr09:21494683..21494707 (25 bp)
ATTGACCTGATTCTTCTACTGACGA
LOC_Os09g37230
Os.18663.1.S1_at--8--10451Chr09:21494740..21494764 (25 bp)
TTAGGGCGTGCATTATTCTCCCAGA
LOC_Os09g37230
Os.18663.1.S1_at--544--111Chr09:21494754..21494778 (25 bp)
ATTCTCCCAGATCCTGTGGTTTAGC
LOC_Os09g37230
Os.18663.1.S1_at--1151--4291Chr09:21494798..21494822 (25 bp)
CCTACTGCTTACTTTTTGTCCTGAA
LOC_Os09g37230
Os.18663.1.S1_at--467--3111Chr09:21494835..21494859 (25 bp)
AATATAATGTTCTGTGCCGTCCTGT
LOC_Os09g37230
Target Sequence 
GAGCCTGCTGAAAGACCAGATTTCTCTGAAATATTAGAAACTCTTCAGAGAATAGCAGAGGAGGTTGGTGATGAGCATGA
TGGAAAGCACAAGGAGAAAATACTGGGCGGACTATTTTCAGCTTTGAGGGGGCGTGGGCACTAAATGGTGTGGGAATACA
TGTTTTCATTCCATATGGAAGGGCCTGAGAAAAAGATCAGCGTCAGTTCCTTGGCAGGTGCAGCGCCACATTGAGATTAG
ACTGCTGCAGTCGACTTAATGAGCAATTTTCAGATGCAAGTCCATCAAGGTGTTAACTGTTGTCATACTATTTTTTTGGT
GTACAACTTCCGGGTTCCATTACAGCTGTAACATAGGAAGAGTTGTTGTGAAGTGTACATTATTGACCTGATTCTTCTAC
TGACGAGTTGTAACTTGTAGTTGAATAAGAAGCCAGATTTAGGGCGTGCATTATTCTCCCAGATCCTGTGGTTTAGCTAT
GCTTATCTNTCTACTACCTACTGCTTACTTTTTGTCCTGAATTCTTTTTCGACAATATAATGTTCTGTGCCGTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis