Browse Element(s) Details


OsAffx.6503.1.S1_at

Description tigr:9637.m03154
TID=OsAffx.6503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutathione S-transferase, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3724011/11Glutathione S-transferase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37210NANA9+21473144..21476460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37220Os.47463.1.S1_x_at5/119+21479161..21482858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37220Os.14491.2.S1_x_at5/119+21479161..21482858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37230Os.18663.1.S1_at11/119+21487680..21494865protein kinase family protein, putative, expressed
LOC_Os09g37240OsAffx.6503.1.S1_at11/119+21496134..21514635Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os09g37250OsAffx.6504.1.S1_at10/119+21515372..21517140ARID/BRIGHT DNA binding domain containing protein
LOC_Os09g37260OsAffx.18025.1.S1_at11/119+21523888..21525085hypothetical protein
LOC_Os09g37270Os.10858.1.S1_at11/119+21525495..21529378pollen-specific kinase partner protein, putative, expressed
LOC_Os09g37280Os.8278.1.S1_at10/119+21537399..21542468MaoC like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6503.1.S1_at--525--8871Chr09:21514015..21514039 (25 bp)
TGATGGATCGTGTTCAGCCTTCATT
LOC_Os09g37240
OsAffx.6503.1.S1_at--904--11Chr09:21514037..21514061 (25 bp)
ATTGGGACCTTCTCTTGAGGTTTCA
LOC_Os09g37240
OsAffx.6503.1.S1_at--978--5711Chr09:21514065..21514089 (25 bp)
GACGAGAAAACCACTGTCCCTCTGG
LOC_Os09g37240
OsAffx.6503.1.S1_at--984--9311Chr09:21514081..21514105 (25 bp)
TCCCTCTGGATGGTCTGGCGAACAA
LOC_Os09g37240
OsAffx.6503.1.S1_at--650--9471Chr09:21514125..21514149 (25 bp)
TCTGTCACAGCTAGCCAAGTACTTG
LOC_Os09g37240
OsAffx.6503.1.S1_at--426--2291Chr09:21514160..21514184 (25 bp)
AAATGGTTCTGGTACTGGAGCGCTC
LOC_Os09g37240
OsAffx.6503.1.S1_at--842--6231Chr09:21514314..21514338 (25 bp)
GATGGCTCAGCCAATGACACCAAAC
LOC_Os09g37240
OsAffx.6503.1.S1_at--1132--6311Chr09:21514366..21514390 (25 bp)
GATGAATTTTGCAACCCGTCAACCT
LOC_Os09g37240
OsAffx.6503.1.S1_at--7--7071Chr09:21514383..21514407 (25 bp)
GTCAACCTACCCAAGATTCTGGAGT
LOC_Os09g37240
OsAffx.6503.1.S1_at--544--2651Chr09:21514441..21514465 (25 bp)
AAGCCGTTGCACATTTACCTTGTTT
LOC_Os09g37240
OsAffx.6503.1.S1_at--311--7131Chr09:21514494..21514518 (25 bp)
GTCATACTTGGATGATGCCACTGCC
LOC_Os09g37240
Target Sequence 
TGATGGATCGTGTTCAGCCTTCATTGGGACCTTCTCTTGAGGTTTCAAGCGACGAGAAAACCACTGTCCCTCTGGATGGT
CTGGCGAACAACCTATCAAATGTCAGTCCCTCTGTCACAGCTAGCCAAGTACTTGGTCGATCTGAAAATGGTTCTGGTAC
TGGAGCGCTCTCTGGAGAAACGGTACCATCAAATTCTCAAGAAAATTCTGAAGGGACGCCAAGCGAAGAAATATCAAAGC
AGCAACCGCAAACTAACATGTCCAGTACAAAATTATCTAAAGATGACAATAAAGAAGCCGATGGCTCAGCCAATGACACC
AAACCTGGAGACAGTGAAGATAATCCATCTCGATGAATTTTGCAACCCGTCAACCTACCCAAGATTCTGGAGTGCACTAT
TAAATAAATATTTATCAAGTAAGGAGAAGCCGTTGCACATTTACCTTGTTTTTTTTTCATATAATAAGGACATCCCCTTG
TCATACTTGGATGATGCCACTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis