Browse Element(s) Details


OsAffx.6504.1.S1_at

Description tigr:9637.m03155
TID=OsAffx.6504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3725010/11ARID/BRIGHT DNA binding domain containing protein
LOC_Os08g226901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37230Os.18663.1.S1_at11/119+21487680..21494865protein kinase family protein, putative, expressed
LOC_Os09g37240OsAffx.6503.1.S1_at11/119+21496134..21514635Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os09g37250OsAffx.6504.1.S1_at10/119+21515372..21517140ARID/BRIGHT DNA binding domain containing protein
LOC_Os09g37260OsAffx.18025.1.S1_at11/119+21523888..21525085hypothetical protein
LOC_Os09g37270Os.10858.1.S1_at11/119+21525495..21529378pollen-specific kinase partner protein, putative, expressed
LOC_Os09g37280Os.8278.1.S1_at10/119+21537399..21542468MaoC like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6504.1.S1_at--190--8911Chr09:21516393..21516417 (25 bp)
TGAGAGGAACCTCCGATCAGTCGCC
LOC_Os09g37250
OsAffx.6504.1.S1_at--796--8051NONE
GGAGAGCCCTGCAGCTTCAGCGTGA
NONE
OsAffx.6504.1.S1_at--1049--1551Chr09:21516219..21516243 (25 bp)
AGCTTCAGCGTGACCGGCTCCATCG
LOC_Os09g37250
OsAffx.6504.1.S1_at--316--5751Chr09:21516195..21516219 (25 bp)
GACGGCAAGTTCGAGCACGGCTACC
LOC_Os09g37250
OsAffx.6504.1.S1_at--995--9111Chr09:21516140..21516164 (25 bp)
TGCGAGGCGTGCTCTACCGCGTCGC
LOC_Os09g37250
OsAffx.6504.1.S1_at--790--1671Chr09:21516023..21516047 (25 bp)
AGCCGAGGCCGAACAGGAGCGCCTA
LOC_Os09g37250
OsAffx.6504.1.S1_at--339--8331Chr09:21516017..21516041 (25 bp)
GGCCGAACAGGAGCGCCTACAACTT
LOC_Os09g37250
OsAffx.6504.1.S1_at--343--1811Chr09:21515958..21515982 (25 bp)
ACCCACCCGCACAGGGAGAGGGAGT
LOC_Os09g37250
OsAffx.6504.1.S1_at--591--5611Chr09:21515458..21515913 (25 bp)
GACAAGATGGTTTACTACAGGCACA
LOC_Os09g37250
OsAffx.6504.1.S1_at--791--2012Chr09:21515445..21515469 (25 bp)
ACTACAGGCACAGTGCAGAGGACAA
LOC_Os09g37250
OsAffx.6504.1.S1_at--1041--1291Chr09:21515403..21515427 (25 bp)
AGATGCAGGAGTACAACGAGAGGCT
LOC_Os09g37250
Target Sequence 
TGAGAGGAACCTCCGATCAGTCGCCGGCGGCGGCGGAGGCCGGGAAGAGAATGGCGCTCCCGGAGCGGCTAGGCGGAGAG
CCCTGCAGCTTCAGCGTGACCGGCTCCATCGACGGCAAGTTCGAGCACGGCTACCTCGTCACCGTCAAGATCGCCGCCGA
GACGCTGCGAGGCGTGCTCTACCGCGTCGCACCACCACCACCACCACCAGCAGCACCACCACCACCGCCACCGCCGGCGA
GGGGCCGGCGGCGGCGAGGGCGGCGGCAGCGCGACCCGGCGCAGCCGAGGCCGAACAGGAGCGCCTACAACTTCTTCTTC
AAGGAGAAGCACCCGGAGCTGAAGGCGACCCACCCGCACAGGGAGAGGGAGTACAGCAGGATGATCGGCGACGCCTGGAA
CCGCCTCGCCGCCGACGACAAGATGGTTTACTACAGGCACAGTGCAGAGGACAAGGAGAGGTACAAGAGGGAGATGCAGG
AGTACAACGAGAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis