Browse Element(s) Details


Os.18674.1.S1_at

Description gb:AK066360.1
DB_XREF= gi:32976378
TID=Os.18674.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066M09, full insert sequence.
FL= gb:AK060736.1 gb:AK066360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0499011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04990Os.18674.1.S1_at11/113+2394731..2398679expressed protein
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified
LOC_Os03g05010NANA3+2405073..2407904retrotransposon protein, putative, unclassified
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18674.1.S1_at--85--7091Chr03:2398096..2398120 (25 bp)
GTCAATGCTGCCCTACTAGACATCG
LOC_Os03g04990
Os.18674.1.S1_at--137--3711Chr03:2398111..2398135 (25 bp)
CTAGACATCGGCCAAAGCAAGCTTT
LOC_Os03g04990
Os.18674.1.S1_at--440--8971Chr03:2398229..2398253 (25 bp)
TGAAAGGCTGGCTCTCGGACGATGA
LOC_Os03g04990
Os.18674.1.S1_at--788--6551Chr03:2398323..2398347 (25 bp)
GATTCAAGGCAGGTCATGGCCCGAA
LOC_Os03g04990
Os.18674.1.S1_at--1134--7731Chr03:2398476..2398500 (25 bp)
GGTGTCCACCTATTGCTTTTATTTC
LOC_Os03g04990
Os.18674.1.S1_at--75--8551Chr03:2398509..2398533 (25 bp)
TGGAGACCAAGGCTCATGTGCACTC
LOC_Os03g04990
Os.18674.1.S1_at--663--4271Chr03:2398535..2398559 (25 bp)
CCTGAGGCTCTTACTCTTGTGTATA
LOC_Os03g04990
Os.18674.1.S1_at--427--231Chr03:2398557..2398581 (25 bp)
ATATTGCCCTCATTACTGCTCTGTA
LOC_Os03g04990
Os.18674.1.S1_at--288--8771Chr03:2398578..2398602 (25 bp)
TGTATGCTCAAGATGTTCCCACTCC
LOC_Os03g04990
Os.18674.1.S1_at--1000--1991Chr03:2398598..2398622 (25 bp)
ACTCCCTCTCTGTTAAATGTCACTG
LOC_Os03g04990
Os.18674.1.S1_at--1075--7091Chr03:2398616..2398640 (25 bp)
GTCACTGCCATTCATACATTCTACA
LOC_Os03g04990
Target Sequence 
GTCAATGCTGCCCTACTAGACATCGGCCAAAGCAAGCTTTGGGGAGCTTACCCTTGCACTGACCCACAAGTTAACAATGC
ACGGAGAGTTGCCACAGGCGAGGTGCTGGTTGTTGATGAGGTATGGAGGTTAGTGAAAGGCTGGCTCTCGGACGATGATG
GCGAGAAACATATGGTCAATGCGGAGGACAATGCGGGGTTAGTGGCTGATTGGGTTGTCGGCAAGGAGATTCAAGGCAGG
TCATGGCCCGAAGCACTGCGGTTGGAGGTGGATGAAATCAGCACGGAGATATGTGGGGAGGTCCTGGACGAGTTGGTTGG
GGAGGCATTTTCAGAACTAGTTGGGTGTCATTGAAGCTGAATTTTATTTTCCCTGCCTGTGGTGTCCACCTATTGCTTTT
ATTTCCAATCTGGTGGAGACCAAGGCTCATGTGCACTCCCCTGAGGCTCTTACTCTTGTGTATATTGCCCTCATTACTGC
TCTGTATGCTCAAGATGTTCCCACTCCCTCTCTGTTAAATGTCACTGCCATTCATACATTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis