Browse Element(s) Details


Os.9932.2.S1_x_at

Description gb:NM_189740.1
DB_XREF= gi:34906563
GEN=P0660F12.10
TID=Os.9932.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C27575(C52254),AU082350(C52254)~unknown protein (P0660F12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs C27575(C52254),AU082350(C52254)~unknown protein (P0660F12.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g049802/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04990Os.18674.1.S1_at11/113+2394731..2398679expressed protein
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified
LOC_Os03g05010NANA3+2405073..2407904retrotransposon protein, putative, unclassified
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9932.2.S1_x_at--623--3793Chr08:12870118..12870142 (25 bp)
CTCGCTGGTGGATTGTCGGTTGCCC
NONE
Os.9932.2.S1_x_at--386--4072Chr01:41808454..41808478 (25 bp)
CGAGAGGGATGCGAGCCACTGCACT
NONE
Os.9932.2.S1_x_at--208--10552Chr01:41808492..41808589 (25 bp)
TTCATCTCATCTCCACGTGGATCCG
NONE
Os.9932.2.S1_x_at--642--1911NONE
ACGTGGATCCGGTCGTGGCCCTCTT
NONE
Os.9932.2.S1_x_at--950--2773Chr08:12870454..12870478 (25 bp)
AAGAGCAGCAGCTTGGGCACCAAAG
NONE
Os.9932.2.S1_x_at--1043--8212Chr01:41808703..41808727 (25 bp)
GGCACCAAAGCCACGACGGCGGAAG
NONE
Os.9932.2.S1_x_at--1092--8292Chr01:41808733..41808757 (25 bp)
GGCTATGGCAAAGTACGGCGACGAC
NONE
Os.9932.2.S1_x_at--835--4092Chr01:41808754..41808778 (25 bp)
CGACGGCAGCAAGGCACAAACTATG
NONE
Os.9932.2.S1_x_at--118--3711NONE
CTATGGCAAGGTATGGTGTGCAAAT
NONE
Os.9932.2.S1_x_at--367--3293Chr03:2390845..2390864 (20 bp)
CAAATGGGAAATGAGCAGCGCTGTC
LOC_Os03g04980
Os.9932.2.S1_x_at--372--5334Chr08:12871722..12871746 (25 bp)
GAAGTATTACATATGACCCGGCAAA
NONE
Target Sequence 
CTCGCTGGTGGATTGTCGGTTGCCCGGACGAGAGGGATGCGAGCCACTGCACTCCTCTTCTCCTCTTTCATCTCATCTCC
ACGTGGATCCGGTCGTGGCCCTCTTCGGCAGTACAACGCTACTCTCCACTGTCTTCCTCACCCGTTCTCCATGCCGCTCA
CCTCCCCTCGGTGCCAGGATGGGGAGAGCAAGAGCAGCAGCTTGGGCACCAAAGCCACGACGGCGGAAGGCATGGGCTAT
GGCAAAGTACGGCGACGACGGCAGCAAGGCACAAACTATGGCAAGGTATGGTGTGCAAATGGGAAATGAGCAGCGCTGTC
AGAAAGAAATAGAAGACACTAAACATGGACTTGAATCTGGAAGTATTACATATGACCCGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9932.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis