Browse Element(s) Details


OsAffx.12734.1.S1_at

Description tigr:9631.m00411
TID=OsAffx.12734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=X98929 from Lycopersicum esculentum.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0495011/11subtilase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04920Os.14946.1.S1_at11/113+2346967..2353621ABC transporter family protein, putative, expressed
LOC_Os03g04930Os.9536.1.S1_at11/113+2354327..2357146pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g04940Os.49308.1.A1_at11/113+2359148..2363763expressed protein
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005576cellular_componentextracellular region
GO:0009897cellular_componentexternal side of plasma membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12734.1.S1_at--226--7791Chr03:2368688..2368712 (25 bp)
GGTGCGGTCCGCGATCATGACGACC
LOC_Os03g04950
OsAffx.12734.1.S1_at--641--1771Chr03:2368726..2368750 (25 bp)
ACCGGCAGGGCAAGCCGATCATGGA
LOC_Os03g04950
OsAffx.12734.1.S1_at--850--7691Chr03:2368878..2368902 (25 bp)
GGGTACACCCACATGGAGATCTTCA
LOC_Os03g04950
OsAffx.12734.1.S1_at--1056--6031Chr03:2368893..2368917 (25 bp)
GAGATCTTCAAGATCACCCACGCTG
LOC_Os03g04950
OsAffx.12734.1.S1_at--617--1271Chr03:2368903..2368927 (25 bp)
AGATCACCCACGCTGGCGTCAACTG
LOC_Os03g04950
OsAffx.12734.1.S1_at--618--2531Chr03:2368965..2368989 (25 bp)
AACTACCCATCCATATCGGTGGCGT
LOC_Os03g04950
OsAffx.12734.1.S1_at--543--4331Chr03:2368971..2368995 (25 bp)
CCATCCATATCGGTGGCGTTCAAGA
LOC_Os03g04950
OsAffx.12734.1.S1_at--704--8371Chr03:2368985..2369009 (25 bp)
GGCGTTCAAGACGAACACCACGTCG
LOC_Os03g04950
OsAffx.12734.1.S1_at--971--9091Chr03:2369014..2369038 (25 bp)
TGCTCCAGAGGACGGTCACCAACGT
LOC_Os03g04950
OsAffx.12734.1.S1_at--1056--5451Chr03:2369048..2369072 (25 bp)
GAACTCGACGTACACCGCGCAGGTC
LOC_Os03g04950
OsAffx.12734.1.S1_at--162--1891Chr03:2369118..2369142 (25 bp)
ACGTTCTCGGAGTTCGGCGAGAAGA
LOC_Os03g04950
Target Sequence 
GGTGCGGTCCGCGATCATGACGACCGCCGACGTGACGGACCGGCAGGGCAAGCCGATCATGGACGGGAACGGCGGCAAGG
CCGACGCGTACGCCATGGGCGCCGGGCACGTGAACCCGGCGAGGGCCGTCGACCCGGGCCTCGTCTACGACATCGACCCG
GCCGACTACGTCACCCACCTCTGCAACCTCGGGTACACCCACATGGAGATCTTCAAGATCACCCACGCTGGCGTCAACTG
CACCGCCGTGCTGGAGCGGAACGCCGGCTTCAGCCTCAACTACCCATCCATATCGGTGGCGTTCAAGACGAACACCACGT
CGGCGGTGCTCCAGAGGACGGTCACCAACGTCGGCACGCCGAACTCGACGTACACCGCGCAGGTCGCCGCGCCGCACGGC
GTCAGGGTCAGGGTGTCGCCGGCGACGCTGACGTTCTCGGAGTTCGGCGAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis