Browse Element(s) Details


Os.9536.1.S1_at

Description gb:AK120438.1
DB_XREF= gi:37990061
TID=Os.9536.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098E18, full insert sequence.
FL= gb:AK067103.1 gb:AK120438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0493011/11pre-mRNA processing protein PRP39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04910Os.40360.1.S1_x_at1/113+2336410..2337645hypothetical protein
LOC_Os03g04920Os.14946.1.S1_at11/113+2346967..2353621ABC transporter family protein, putative, expressed
LOC_Os03g04930Os.9536.1.S1_at11/113+2354327..2357146pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g04940Os.49308.1.A1_at11/113+2359148..2363763expressed protein
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9536.1.S1_at--1048--8591Chr03:2354898..2354922 (25 bp)
TGGTCGATTCGAGCACAAGGTATAA
LOC_Os03g04930
Os.9536.1.S1_at--211--2911Chr03:2354882..2354906 (25 bp)
AAGGTATAAGATCATCTCTGCGGGA
LOC_Os03g04930
Os.9536.1.S1_at--970--10071Chr03:2354840..2354864 (25 bp)
TATCGAACCATGCTGGCTGCAGTAC
LOC_Os03g04930
Os.9536.1.S1_at--466--7531Chr03:2354804..2354828 (25 bp)
GGGCCCGACCGTGGAATACAACTCA
LOC_Os03g04930
Os.9536.1.S1_at--750--291Chr03:2354770..2354794 (25 bp)
ATAGACGCTGTGCTTAGCTTCTTGC
LOC_Os03g04930
Os.9536.1.S1_at--776--3651Chr03:2354744..2354768 (25 bp)
CTTCTTTCTTCGGTTCACAGCTGAA
LOC_Os03g04930
Os.9536.1.S1_at--625--9911Chr03:2354715..2354739 (25 bp)
TACTGAACAGTCTTCCGGTGGAGCT
LOC_Os03g04930
Os.9536.1.S1_at--1055--9351Chr03:2354522..2354546 (25 bp)
TCGAACGATCGATATGCTTTGCCAA
LOC_Os03g04930
Os.9536.1.S1_at--487--731Chr03:2354428..2354452 (25 bp)
ATGTTGTCCTGTTTGATCATCTGGC
LOC_Os03g04930
Os.9536.1.S1_at--202--8851Chr03:2354415..2354439 (25 bp)
TGATCATCTGGCCTGTTTGTACCTT
LOC_Os03g04930
Os.9536.1.S1_at--312--8771Chr03:2354402..2354426 (25 bp)
TGTTTGTACCTTGTGTCAGCTATAA
LOC_Os03g04930
Target Sequence 
TGGTCGATTCGAGCACAAGGTATAAGATCATCTCTGCGGGANATCTGGGAGATNCCGTTATCGAACCATGCTGGCTGCAG
TACATGAGAGAATGGGGCCCGACCGTGGAATACAACTCACGGTCGGAGATAGACGCTGTGCTTAGCTTCTTGCCCTTCTT
TCTTCGGTTCACAGCTGAAGCAATACTGAACAGTCTTCCGGTGGAGCTGTACGAGGAGGAAGGACCAACTGGACCAAAGG
AGAAAAACAACTGGGAAGGCGATGAGANGAGGCTAGAAGATGTTTCCAACTTCAAATATATGCTTCATAATTTGTTCCAG
AATCCAGATAGCTCTATAGATATGTACCCTAAGGGTGCTGTAATAGTGATATTGGGATCGAACGATCGATATGCTTTGCC
AAGGCATTTCAGTTCATAGAGTTTGTAGGTGAAATGCTGGCAAAGCTGAAGGTTGAAGAGGTAATCACGTTATGTTGTCC
TGTTTGATCATCTGGCCTGTTTGTACCTTGTGTCAGCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis