Browse Element(s) Details


Os.18692.1.S1_at

Description gb:AK111267.1
DB_XREF= gi:32996476
TID=Os.18692.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20130 putative receptor protein kinase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F08, full insert sequence.
FL= gb:AY224423.1 gb:AK111267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4329011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43280Os.10493.1.S1_at11/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.52279.1.S1_at10/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_s_at8/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_x_at5/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43290Os.18692.1.S1_at11/112+26084581..26086052Protein kinase domain containing protein, expressed
LOC_Os02g43300Os.13466.1.S1_at11/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.12779.1.A1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.2477.1.S1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43310OsAffx.29929.1.S1_at5/112+26106943..26107553hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18692.1.S1_at--1068--10771Chr02:26084813..26084837 (25 bp)
TTGATCTCAGCCGTCGGATCCAAAC
LOC_Os02g43290
Os.18692.1.S1_at--429--7191Chr02:26084801..26084825 (25 bp)
GTCGGATCCAAACCAAGCGATAAGA
LOC_Os02g43290
Os.18692.1.S1_at--290--6251Chr02:26084778..26084802 (25 bp)
GATGGTTTCATGAGTTACCCGTCGA
LOC_Os02g43290
Os.18692.1.S1_at--511--451Chr02:26084769..26084793 (25 bp)
ATGAGTTACCCGTCGAAAGGCTGTA
LOC_Os02g43290
Os.18692.1.S1_at--979--9951Chr02:26084763..26084787 (25 bp)
TACCCGTCGAAAGGCTGTAAATAGC
LOC_Os02g43290
Os.18692.1.S1_at--497--3091Chr02:26084744..26084768 (25 bp)
AATAGCATGTTAGGGAGGCTCCAAA
LOC_Os02g43290
Os.18692.1.S1_at--415--411Chr02:26084691..26084715 (25 bp)
ATCATCAGTGGATTAGTTGAAACTT
LOC_Os02g43290
Os.18692.1.S1_at--887--10391Chr02:26084648..26084672 (25 bp)
TTTTGTGATGTCATGCATGGATGCG
LOC_Os02g43290
Os.18692.1.S1_at--111--3511Chr02:26084633..26084657 (25 bp)
CATGGATGCGGTTATTGTAGGCATG
LOC_Os02g43290
Os.18692.1.S1_at--427--6931Chr02:26084617..26084641 (25 bp)
GTAGGCATGTAGTGGCCCATTAACA
LOC_Os02g43290
Os.18692.1.S1_at--431--7551Chr02:26084606..26084630 (25 bp)
GTGGCCCATTAACAAGGGATCTTGT
LOC_Os02g43290
Target Sequence 
TTGATCTCAGCCGTCGGATCCAAACCAAGCGATAAGATGGTTTCATGAGTTACCCGTCGAAAGGCTGTAAATAGCATGTT
AGGGAGGCTCCAAAAGTTCATTTTTTTTTACCTTATCTCATCATCATCAGTGGATTAGTTGAAACTTTGGGATCAAGTAG
AAAAATTTTGTGATGTCATGCATGGATGCGGTTATTGTAGGCATGTAGTGGCCCATTAACAAGGGATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis