Browse Element(s) Details


Os.18747.1.S1_at

Description gb:AK107293.1
DB_XREF= gi:32992502
TID=Os.18747.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C01, full insert sequence.
FL= gb:AK107293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1430011/11La domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14270Os.14754.1.A1_s_at1/1111+7985564..7989894hAT family dimerisation domain containing protein
LOC_Os11g14280NANA11+7992269..7998628hAT family dimerisation domain containing protein
LOC_Os11g14290NANA11+8012790..8013191hypothetical protein
LOC_Os11g14300Os.18747.1.S1_at11/1111+8013867..8022134La domain-containing protein, putative, expressed
LOC_Os11g14310OsAffx.18845.1.S1_at11/1111+8028280..8028558hypothetical protein
LOC_Os11g14320Os.48823.1.A1_at1/1111+8030712..8032688hypothetical protein
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18747.1.S1_at--1157--571Chr11:8014408..8014432 (25 bp)
ATCCAACCATCCTGCCAAGAACGAG
LOC_Os11g14300
Os.18747.1.S1_at--811--4951Chr11:8014227..8014251 (25 bp)
GCATCATCCGGTAGCGAACCTTGAA
LOC_Os11g14300
Os.18747.1.S1_at--196--6351Chr11:8014158..8014182 (25 bp)
GATGCGGTTGAGAGACTTGTCTTTT
LOC_Os11g14300
Os.18747.1.S1_at--463--2851Chr11:8014129..8014153 (25 bp)
AAGTCTGTCCTTGGAAGCGTGCCTC
LOC_Os11g14300
Os.18747.1.S1_at--776--2671Chr11:8014115..8014139 (25 bp)
AAGCGTGCCTCCTTTTGTTGTTTGT
LOC_Os11g14300
Os.18747.1.S1_at--410--10171Chr11:8014084..8014108 (25 bp)
TATACACGTTTTTCTGCCGTGTGCT
LOC_Os11g14300
Os.18747.1.S1_at--155--7312Chr11:8014064..8014088 (25 bp)
GTGCTGTTGTTGTGTAGTACTACTT
LOC_Os11g14300
Os.18747.1.S1_at--974--5111Chr11:8014025..8014049 (25 bp)
GCACACACCGTTTGTGTGACTCGGT
LOC_Os11g14300
Os.18747.1.S1_at--1091--1111Chr11:8013997..8014021 (25 bp)
AGTGAGTGACCTGAGTGTGCTCCCT
LOC_Os11g14300
Os.18747.1.S1_at--175--3891Chr11:8013974..8013998 (25 bp)
CTGTCACTTTGCAGCTCTGTTTTTT
LOC_Os11g14300
Os.18747.1.S1_at--1118--10691Chr11:8013935..8013959 (25 bp)
TTGCCGCCCTGACTGTAAGATTGTA
LOC_Os11g14300
Target Sequence 
ATCCAACCATCCTGCCAAGAACGAGCAGCAACAGCAGGCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACCAG
CAGGAGCAAACAAGCAGCCTCCAGGGCCACGCATGCCTGANGGAACACGCGGGTTCGCCATGGGCAGAGGGAAGCCGCAA
ACATNTACGACGACACCCAGCGCATCATCCGGTAGCGAACCTTGAAACTCGAAACACGCAATGTTGCTGTTGGTCATGTT
GATAGAAAGAGATGCGGTTGAGAGACTTGTCTTTTTTACAAGTCTGTCCTTGGAAGCGTGCCTCCTTTTGTTGTTTGTTC
TATATATACACGTTTTTCTGCCGTGTGCTGTTGTTGTGTAGTACTACTTNCTGAAACANGGTAGAGCACACACCGTTTGT
GTGACTCGGTGTGAGTGAGTGACCTGAGTGTGCTCCCTGTCACTTTGCAGCTCTGTTTTTTTTTTTTTNACCATTTTTGC
CGCCCTGACTGTAAGATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis