Browse Element(s) Details


Os.48823.1.A1_at

Description gb:CR289429
DB_XREF= gi:44675995
DB_XREF=CR289429
CLONE=p821d02p3
TID=Os.48823.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48823 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g143201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14290NANA11+8012790..8013191hypothetical protein
LOC_Os11g14300Os.18747.1.S1_at11/1111+8013867..8022134La domain-containing protein, putative, expressed
LOC_Os11g14310OsAffx.18845.1.S1_at11/1111+8028280..8028558hypothetical protein
LOC_Os11g14320Os.48823.1.A1_at1/1111+8030712..8032688hypothetical protein
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48823.1.A1_at--157--511NONE
ATCGGGCGCTGCAAGGCAGATCGTC
NONE
Os.48823.1.A1_at--948--8051NONE
GGAGCAGAGGGCAGCCACCATTGTT
NONE
Os.48823.1.A1_at--404--4511Chr09:13539659..13539683 (25 bp)
GCCGATCTTGATCTGGCCACAGAAG
NONE
Os.48823.1.A1_at--480--4911Chr09:13539562..13539586 (25 bp)
GCTTCTGTTGCGCTGATTCCGGATC
NONE
Os.48823.1.A1_at--105--8831Chr09:13539549..13539573 (25 bp)
TGATTCCGGATCTTTTCTGTTGCAC
NONE
Os.48823.1.A1_at--335--6431Chr09:13539541..13539565 (25 bp)
GATCTTTTCTGTTGCACGTCGATAT
NONE
Os.48823.1.A1_at--603--5091Chr09:13539528..13539552 (25 bp)
GCACGTCGATATGAAGCGTTCGTTT
NONE
Os.48823.1.A1_at--167--10371Chr09:13539504..13539528 (25 bp)
TTTTTTCCACTGTCACGTGTATACG
NONE
Os.48823.1.A1_at--280--1911Chr09:13539490..13539514 (25 bp)
ACGTGTATACGTTTCTAAGTTGGAT
NONE
Os.48823.1.A1_at--442--9531Chr09:13539477..13539501 (25 bp)
TCTAAGTTGGATGCACGTCTACGTT
NONE
Os.48823.1.A1_at--570--9038Chr10:7513552..7513572 (21 bp)
TGCACGTCTACGTTGGCTTCACCAT
NONE
Target Sequence 
ATCGGGCGCTGCAAGGCAGATCGTCAGTCGGGGAGGAGTTTGCCGGAGCAGAGGGCAGCCACCATTGTTCACCGGTGCTC
GCCGCCGATCTTGATCTGGCCACAGAAGGGGGACGCAGAGGAGATCGACGCGGAATCGCGGGCGCGCTGATGTGGGGATG
CGCGAAGATGGATTGGGGGCGCTTCTGTTGCGCTGATTCCGGATCTTTTCTGTTGCACGTCGATATGAAGCGTTCGTTTT
TTTTCCACTGTCACGTGTATACGTTTCTAAGTTGGATGCACGTCTACGTTGGCTTCACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48823.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis