Browse Element(s) Details


Os.18753.1.S1_at

Description gb:AK100923.1
DB_XREF= gi:32986132
TID=Os.18753.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133P16, full insert sequence.
FL= gb:AK100923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4483011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44800OsAffx.13351.1.S1_at11/113+25218463..25222121expressed protein
LOC_Os03g44810Os.54281.1.S1_at11/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44810OsAffx.29100.1.S1_at1/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44820Os.8552.1.S1_at10/113+25230628..25232697glutamyl-tRNA amidotransferase, C subunit family protein, expressed
LOC_Os03g44830Os.18753.1.S1_at11/113+25233636..25240504expressed protein
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein
LOC_Os03g44850NANA3+25258466..25258900hypothetical protein
LOC_Os03g44860OsAffx.25545.1.S1_at11/113+25264911..25265282hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18753.1.S1_at--372--1951Chr03:25234808..25234832 (25 bp)
ACTGTGACACTTCTAATACGAGAAT
LOC_Os03g44830
Os.18753.1.S1_at--363--6951Chr03:25234768..25234792 (25 bp)
GTAGTTCTTACTTCTGGTTTTCCAT
LOC_Os03g44830
Os.18753.1.S1_at--900--7871Chr03:25234753..25234777 (25 bp)
GGTTTTCCATTACAATAGGCATCCA
LOC_Os03g44830
Os.18753.1.S1_at--714--10091Chr03:25234738..25234762 (25 bp)
TAGGCATCCAGCAGCAAACACAGTC
LOC_Os03g44830
Os.18753.1.S1_at--273--2471Chr03:25234722..25234746 (25 bp)
AACACAGTCAGAGCTGATGCAACTG
LOC_Os03g44830
Os.18753.1.S1_at--25--9031Chr03:25234705..25234729 (25 bp)
TGCAACTGTAGCAGCTGACCAGGTT
LOC_Os03g44830
Os.18753.1.S1_at--725--611Chr03:25234122..25234587 (25 bp)
ATGGGCTTTGAAAAGACTCAAGCTG
LOC_Os03g44830
Os.18753.1.S1_at--999--5271Chr03:25233855..25233879 (25 bp)
GAATGGACCATTCTGGGCAATTGTT
LOC_Os03g44830
Os.18753.1.S1_at--29--3111Chr03:25233756..25233780 (25 bp)
AATAGTTGCATTGAAGGCTGTTTCT
LOC_Os03g44830
Os.18753.1.S1_at--693--6611Chr03:25233686..25233710 (25 bp)
GTTGGCAGATCTTCACAATTGCTAT
LOC_Os03g44830
Os.18753.1.S1_at--814--10191Chr03:25233664..25233688 (25 bp)
TATTTGGCAATATGTCTAGCTAGAC
LOC_Os03g44830
Target Sequence 
ACTGTGACACTTCTAATACGAGAATAAACCTAGTTGTTTTGTAGTTCTTACTTCTGGTTTTCCATTACAATAGGCATCCA
GCAGCAAACACAGTCAGAGCTGATGCAACTGTAGCAGCTGACCAGGTTGATACATTTGATGAAGAACTTAAGAAGCTGGT
TGGAATGGGCTTTGAAAAGACTCAAGCTGAAGTTGCTCTTGCTGCTGCCGATGGAGATCCAAATGTTGCTATTGAGATTC
TCATGAGTCAGCAGGGTTAAAGGTTTCAACATCACTGATAGCAAGCGATGGAGGCTCAATTTTAGGGTGTAGATTCTGGT
TAGTAAAATTCAAGAATGGACCATTCTGGGCAATTGTTTTTGCCAACATGGTTATATTGAAGATGCCCTTAATTGTGCTT
CTATGAAGGTCAAAACTACAGTTAACAATGNCAATAGTTGCATTGAAGGCTGTTTCTTGATGTATTAGTAAAACAGTAAT
TGATGCTCGGGGCGCTCATTTTGTTGGCAGATCTTCACAATTGCTATTTGGCAATATGTCTAGCTAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis