Browse Element(s) Details


Os.54281.1.S1_at

Description gb:AK103022.1
DB_XREF= gi:32988231
TID=Os.54281.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117A10, full insert sequence.
FL= gb:AK103022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4481011/11SPX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44780Os.54150.1.S1_at11/113+25205168..25208480elongation factor Tu family protein, putative, expressed
LOC_Os03g44800OsAffx.13351.1.S1_at11/113+25218463..25222121expressed protein
LOC_Os03g44810Os.54281.1.S1_at11/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44810OsAffx.29100.1.S1_at1/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44820Os.8552.1.S1_at10/113+25230628..25232697glutamyl-tRNA amidotransferase, C subunit family protein, expressed
LOC_Os03g44830Os.18753.1.S1_at11/113+25233636..25240504expressed protein
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54281.1.S1_at--255--5331Chr03:25223335..25223357 (23 bp)
GAAGTGTCCTGTATGCCGATCGGAT
LOC_Os03g44810
Os.54281.1.S1_at--10--6411Chr03:25223046..25223066 (21 bp)
GATCGGATGGTGTCTTTGCTCATGC
LOC_Os03g44810
Os.54281.1.S1_at--551--4731Chr03:25223023..25223047 (25 bp)
GCTGTGCATATGACTGAACTTGACT
LOC_Os03g44810
Os.54281.1.S1_at--681--7631Chr03:25222816..25222840 (25 bp)
GGGACTCTCAGGCTATGCTGTCAAT
LOC_Os03g44810
Os.54281.1.S1_at--538--8851Chr03:25222762..25222786 (25 bp)
TGATCGCCATTCATTGCTTGCATTG
LOC_Os03g44810
Os.54281.1.S1_at--1107--9631Chr03:25222719..25222743 (25 bp)
TCAGGTCGACCATAATCTCAAGCGT
LOC_Os03g44810
Os.54281.1.S1_at--233--9811Chr03:25222665..25222689 (25 bp)
TAACTGCCAGTCTCCTAAAAGTTGC
LOC_Os03g44810
Os.54281.1.S1_at--1085--5691Chr03:25222630..25222654 (25 bp)
GACTACCTTGGGATAGCACAGGCTA
LOC_Os03g44810
Os.54281.1.S1_at--242--5391Chr03:25222571..25222595 (25 bp)
GAAGCAATTCCATTCCATTATTTTT
LOC_Os03g44810
Os.54281.1.S1_at--751--10251Chr03:25222548..25222572 (25 bp)
TTTGTCCTAATGTTGTCGCCTGATA
LOC_Os03g44810
Os.54281.1.S1_at--637--10191Chr03:25222400..25222424 (25 bp)
TATTTGAATGTCTCTGGCTCGCTGC
LOC_Os03g44810
Target Sequence 
GAAGTGTCCTGTATGCCGATCGGATGGTGTCTTTGCTCATGCTGTGCATATGACTGAACTTGACTTGCTCATCAAAACAA
GGAGCAAGGATTACTGGAGACAGAGACTGCGAGAAGAGCGGAATGAGATGGTTAAGCAATCCAAAGAATACTGGGACTCT
CAGGCTATGCTGTCAATGGGAATTTGACTGAGATCTGAAGTTACAATGATCGCCATTCATTGCTTGCATTGGTGTCAAAC
CAAAAATAATCAGGTCGACCATAATCTCAAGCGTGGAGATCATCCAAGATGATTTTAACTTATTAACTGCCAGTCTCCTA
AAAGTTGCAATCAGTGAGGACTACCTTGGGATAGCACAGGCTAACACAGCTGAGGTTATTTTATTTTAGCTCTTGAAGAA
GCAATTCCATTCCATTATTTTTTGTCCTAATGTTGTCGCCTGATATAGTTTAATTTGGAAATGCAACCATATTTAATTAA
TTTTCTTTGGACCTTCAAATGTAGTTTGGAACAATTTATACGCAATTTATCTGTTCTTTGCTTTGTAAAAACGAGTGTAG
AAATGTCTTATTTGAATGTCTCTGGCTCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis