Browse Element(s) Details


OsAffx.29100.1.S1_at

Description tigr:9636.m00783
TID=OsAffx.29100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0832011/11hypothetical protein
LOC_Os03g448101/11SPX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08300NANA8+4751029..4754123transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.47463.1.S1_x_at6/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.14491.2.S1_x_at4/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08320OsAffx.29100.1.S1_at11/118+4772768..4773154hypothetical protein
LOC_Os08g08330Os.27639.1.S1_x_at4/118+4774599..4775442transposon protein, putative, unclassified
LOC_Os08g08340OsAffx.16895.1.S1_at9/118+4783682..4785100hypothetical protein
LOC_Os08g08350OsAffx.19542.3.S1_x_at5/118+4787820..4792855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08350OsAffx.21754.1.S1_x_at2/118+4787820..4792855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08350OsAffx.9949.1.S1_at1/118+4787820..4792855retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29100.1.S1_at--984--10392Chr08:4773091..4773115 (25 bp)
TTATTTTCTTTCTTCGCGATGGGTT
LOC_Os08g08320
OsAffx.29100.1.S1_at--277--10571Chr08:4773086..4773110 (25 bp)
TTCTTTCTTCGCGATGGGTTCTCTC
LOC_Os08g08320
OsAffx.29100.1.S1_at--1000--4051Chr08:4773075..4773099 (25 bp)
CGATGGGTTCTCTCGGCGGCAAGAT
LOC_Os08g08320
OsAffx.29100.1.S1_at--300--2811Chr08:4773055..4773079 (25 bp)
AAGATCATCGCCACAGCTGGGTGCG
LOC_Os08g08320
OsAffx.29100.1.S1_at--916--6431Chr08:4773053..4773077 (25 bp)
GATCATCGCCACAGCTGGGTGCGCC
LOC_Os08g08320
OsAffx.29100.1.S1_at--745--4411Chr08:4773007..4773031 (25 bp)
GCCAGCGGCCATGGTTTAGTACTCA
LOC_Os08g08320
OsAffx.29100.1.S1_at--933--3371Chr08:4773005..4773029 (25 bp)
CAGCGGCCATGGTTTAGTACTCAGC
LOC_Os08g08320
OsAffx.29100.1.S1_at--250--4431Chr08:4773000..4773024 (25 bp)
GCCATGGTTTAGTACTCAGCCTTCT
LOC_Os08g08320
OsAffx.29100.1.S1_at--1021--3491Chr08:4772998..4773022 (25 bp)
CATGGTTTAGTACTCAGCCTTCTGG
LOC_Os08g08320
OsAffx.29100.1.S1_at--881--851Chr08:4772928..4772952 (25 bp)
ATGGCATCCCTCTACTCGTCGCTGT
LOC_Os08g08320
OsAffx.29100.1.S1_at--149--7271Chr08:4772878..4772902 (25 bp)
GTCCTTGGGCTCGTCATGGCCTCCT
LOC_Os08g08320
Target Sequence 
TTATTTTCTTTCTTCGCGATGGGTTCTCTCGGCGGCAAGATCATCGCCACAGCTGGGTGCGCCATCGCCTTCTTCGCGGC
CGGCGCCAGCGGCCATGGTTTAGTACTCAGCCTTCTGGGTGTCCTCGCCGGCGTCATCATCGCCATCAGCTCCGCAACGC
TCCATGGCATCCCTCTACTCGTCGCTGTGGCTCTGCGCCGCCGCAACCTCGCCGTCCTTGGGCTCGTCATGGCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis