Browse Element(s) Details


OsAffx.16895.1.S1_at

Description tigr:9636.m00785
TID=OsAffx.16895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g083409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08310Os.47463.1.S1_x_at6/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08310Os.14491.2.S1_x_at4/118+4755641..4761656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08320OsAffx.29100.1.S1_at11/118+4772768..4773154hypothetical protein
LOC_Os08g08330Os.27639.1.S1_x_at4/118+4774599..4775442transposon protein, putative, unclassified
LOC_Os08g08340OsAffx.16895.1.S1_at9/118+4783682..4785100hypothetical protein
LOC_Os08g08350OsAffx.19542.3.S1_x_at5/118+4787820..4792855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08350OsAffx.21754.1.S1_x_at2/118+4787820..4792855retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08350OsAffx.9949.1.S1_at1/118+4787820..4792855retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16895.1.S1_at--100--3631Chr08:4785022..4785046 (25 bp)
CTTGCTTCAGCTGTGGTGGGAATCA
LOC_Os08g08340
OsAffx.16895.1.S1_at--1136--10511Chr08:4785017..4785041 (25 bp)
TTCAGCTGTGGTGGGAATCACGGCC
LOC_Os08g08340
OsAffx.16895.1.S1_at--914--7471Chr08:4785010..4785034 (25 bp)
GTGGTGGGAATCACGGCCGCCTCAT
LOC_Os08g08340
OsAffx.16895.1.S1_at--739--8491Chr08:4784943..4784967 (25 bp)
TGGCATTTGGGCTCTTCGTCCTTCT
LOC_Os08g08340
OsAffx.16895.1.S1_at--1088--211Chr08:4784939..4784963 (25 bp)
ATTTGGGCTCTTCGTCCTTCTGCTC
LOC_Os08g08340
OsAffx.16895.1.S1_at--432--4171NONE
CGCCTGTTCGCCGTGGATATTATTG
NONE
OsAffx.16895.1.S1_at--466--3871NONE
CTGTTCGCCGTGGATATTATTGGAA
NONE
OsAffx.16895.1.S1_at--30--8171Chr08:4783749..4783773 (25 bp)
GGAAAAATTATTGCCATCTCCTGTG
LOC_Os08g08340
OsAffx.16895.1.S1_at--391--2251Chr08:4783745..4783769 (25 bp)
AAATTATTGCCATCTCCTGTGCAGC
LOC_Os08g08340
OsAffx.16895.1.S1_at--934--10211Chr08:4783741..4783765 (25 bp)
TATTGCCATCTCCTGTGCAGCAATG
LOC_Os08g08340
OsAffx.16895.1.S1_at--858--3271Chr08:4783712..4783736 (25 bp)
CAACAAGTTCATAAGAATTCAGGAT
LOC_Os08g08340
Target Sequence 
CTTGCTTCAGCTGTGGTGGGAATCACGGCCGCCTCATCTGCCGTCACCATGGTCGCCGCCGGCGACGTCAGCCCGCCGGT
GGCATTTGGGCTCTTCGTCCTTCTGCTCGCCGGCCTCACTCTCGCTGCCTCGCCTGTTCGCCGTGGATATTATTGGAAAA
ATTATTGCCATCTCCTGTGCAGCAATGAAATCAACAAGTTCATAAGAATTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis