Browse Element(s) Details


Os.18839.1.S2_at

Description gb:AK106639.1
DB_XREF= gi:32991848
TID=Os.18839.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E02, full insert sequence.
FL= gb:AK106639.1 gb:AK064105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5191011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18839.1.S2_at--868--3391Chr02:31785714..31785738 (25 bp)
CAGCTAATCTAACAGCCAGCCTATT
LOC_Os02g51910
Os.18839.1.S2_at--555--5871Chr02:31785651..31785675 (25 bp)
GAGCCGGCAGCTAGCTATATTATTA
LOC_Os02g51910
Os.18839.1.S2_at--373--10411Chr02:31785632..31785656 (25 bp)
TTATTATCCTTGCTCCGGGTGATCT
LOC_Os02g51910
Os.18839.1.S2_at--237--1531Chr02:31785565..31785589 (25 bp)
AGCAGTGACAGTTTCGACGCACGCG
LOC_Os02g51910
Os.18839.1.S2_at--23--2171Chr02:31785496..31785520 (25 bp)
ACACCTGGTGCGGATGCGTACATGC
LOC_Os02g51910
Os.18839.1.S2_at--825--4871Chr02:31785398..31785422 (25 bp)
GCTATCAACCGGGAGGCTTCGATGA
LOC_Os02g51910
Os.18839.1.S2_at--42--851Chr02:31785374..31785398 (25 bp)
ATGGAGCGGTGATTGGTTGTTCTTC
LOC_Os02g51910
Os.18839.1.S2_at--920--9551Chr02:31785354..31785378 (25 bp)
TCTTCACTTGTTCTGGGCTTATCCA
LOC_Os02g51910
Os.18839.1.S2_at--499--8951Chr02:31785313..31785337 (25 bp)
TGCGAACTTCGTGGACTTTAACCAA
LOC_Os02g51910
Os.18839.1.S2_at--870--151Chr02:31785283..31785307 (25 bp)
ATATAAAAGATTCCCTCCGTGGTAT
LOC_Os02g51910
Os.18839.1.S2_at--92--5271Chr02:31785164..31785188 (25 bp)
GAATGCAACCTAGTGTACGAACTTG
LOC_Os02g51910
Target Sequence 
CAGCTAATCTAACAGCCAGCCTATTATATTAGTGATGGCTATAGGTGACATGGTACTATTATAGAGCCGGCAGCTAGCTA
TATTATTATCCTTGCTCCGGGTGATCTCCGATACTCGGCCACTACACCAGTGGATACGCACGAGCAGCTAGCAGTGACAG
TTTCGACGCACGCGGCTGTGGTAGCGAAGGAACGGCTCGGCCGCTTGGATGGCTACACACACCTGGTGCGGATGCGTACA
TGCACGGACATCACGGGCTTCTACAGAAAAAGTTACTTTCAAAATTATGAAAAATCCAGCACGTTCCACCCTGGCTGCTA
TCAACCGGGAGGCTTCGATGATGGAGCGGTGATTGGTTGTTCTTCACTTGTTCTGGGCTTATCCAGCGGAAATTGGTTGA
TTGCGAACTTCGTGGACTTTAACCAAACTCCATATAAAAGATTCCCTCCGTGGTATACCGTCAGGATAATACAGGTGCAT
TTTGTATATCTGTTTATCTTTTCTTTCTTTATGTAGGTAAATTGCATCGGTGTATACAAAATTGTCGTATGAATGCAACC
TAGTGTACGAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18839.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis