Browse Element(s) Details


Os.18922.1.S1_at

Description gb:AK065442.1
DB_XREF= gi:32975460
TID=Os.18922.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009J14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009J14, full insert sequence.
FL= gb:AK065442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1485011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18922.1.S1_at--308--10271Chr03:8075783..8075807 (25 bp)
TTTGCAGATGACAGTTACGAAGTTC
LOC_Os03g14850
Os.18922.1.S1_at--1061--6771Chr03:8075770..8075794 (25 bp)
GTTACGAAGTTCTCTGAATTGCCTC
LOC_Os03g14850
Os.18922.1.S1_at--97--5351Chr03:8075765..8075789 (25 bp)
GAAGTTCTCTGAATTGCCTCAATCA
LOC_Os03g14850
Os.18922.1.S1_at--362--5211Chr03:8075755..8075779 (25 bp)
GAATTGCCTCAATCATGTCTTCATT
LOC_Os03g14850
Os.18922.1.S1_at--943--4451Chr03:8075750..8075774 (25 bp)
GCCTCAATCATGTCTTCATTTCTAA
LOC_Os03g14850
Os.18922.1.S1_at--502--3511Chr03:8075742..8075766 (25 bp)
CATGTCTTCATTTCTAATTTGTAGC
LOC_Os03g14850
Os.18922.1.S1_at--506--9751Chr03:8075728..8075752 (25 bp)
TAATTTGTAGCTCTTCTTCGTTCCA
LOC_Os03g14850
Os.18922.1.S1_at--429--10811Chr03:8075724..8075748 (25 bp)
TTGTAGCTCTTCTTCGTTCCACAAA
LOC_Os03g14850
Os.18922.1.S1_at--436--6691Chr03:8075709..8075733 (25 bp)
GTTCCACAAACTCACTGCTTGTGCA
LOC_Os03g14850
Os.18922.1.S1_at--1149--3831Chr03:8075695..8075719 (25 bp)
CTGCTTGTGCATGATATATGCAGGT
LOC_Os03g14850
Os.18922.1.S1_at--595--8831Chr03:8075684..8075708 (25 bp)
TGATATATGCAGGTGGCAGTTGTGC
LOC_Os03g14850
Target Sequence 
TTTGCAGATGACAGTTACGAAGTTCTCTGAATTGCCTCAATCATGTCTTCATTTCTAATTTGTAGCTCTTCTTCGTTCCA
CAAACTCACTGCTTGTGCATGATATATGCAGGTGGCAGTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis