Browse Element(s) Details


OsAffx.3245.1.S1_at

Description tigr:9631.m01425
TID=OsAffx.3245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1484011/11CsPK3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14820OsAffx.25090.1.S1_at11/113+8043566..8044306hypothetical protein
LOC_Os03g14820OsAffx.9107.1.S1_x_at2/113+8043566..8044306hypothetical protein
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3245.1.S1_at--334--1951Chr03:8067210..8067234 (25 bp)
ACGGCGAACTCAAAGGACTGTGTGG
LOC_Os03g14840
OsAffx.3245.1.S1_at--476--3271Chr03:8067220..8067244 (25 bp)
CAAAGGACTGTGTGGGCACGCACGA
LOC_Os03g14840
OsAffx.3245.1.S1_at--474--10651Chr03:8067315..8067339 (25 bp)
TTCCTCTACGAGCTCGTGTACGGTC
LOC_Os03g14840
OsAffx.3245.1.S1_at--387--7331Chr03:8067330..8067354 (25 bp)
GTGTACGGTCGCACGCCGTTCAAGG
LOC_Os03g14840
OsAffx.3245.1.S1_at--975--2711Chr03:8067393..8067417 (25 bp)
AAGCAGGTCACGTACCCGCAGCTCG
LOC_Os03g14840
OsAffx.3245.1.S1_at--699--6431Chr03:8067515..8067539 (25 bp)
GATCAAGAGGCACCCGTTCTTCGCC
LOC_Os03g14840
OsAffx.3245.1.S1_at--13--8531Chr03:8067544..8067568 (25 bp)
TGGACTGGGCGCTCATACGGTGCGT
LOC_Os03g14840
OsAffx.3245.1.S1_at--392--5051Chr03:8067670..8067694 (25 bp)
GCAGCTTCGGGAGGAAATCGAATTA
LOC_Os03g14840
OsAffx.3245.1.S1_at--149--7691Chr03:8067709..8067733 (25 bp)
GGGTTTTCCGCAAACTGATGAGCTG
LOC_Os03g14840
OsAffx.3245.1.S1_at--622--4211Chr03:8067716..8067740 (25 bp)
CCGCAAACTGATGAGCTGGAGTCAA
LOC_Os03g14840
OsAffx.3245.1.S1_at--644--4711Chr03:8067730..8067754 (25 bp)
GCTGGAGTCAAGACAGCCGATCCAA
LOC_Os03g14840
Target Sequence 
ACGGCGAACTCAAAGGACTGTGTGGGCACGCACGAGTACCTCGCGCCGGAGCTCGTGAGCGGGAGCGGCCACGGCAACGG
CGTCGACTGGTGGGCCTTCGGCGTCTTCCTCTACGAGCTCGTGTACGGTCGCACGCCGTTCAAGGGGCACGCCAAGGACG
CCACGCTCAAGAACATCCTCGCCAAGCAGGTCACGTACCCGCAGCTCGACGGCGAGGCCGACGCCGCGCAGCTGCGCGAC
CTCATCGGCAGGCTGCTCGAGAGGGACCCGCGGCGGCGCATGGGCTCCGCGCGCGGCGCCGCCGAGATCAAGAGGCACCC
GTTCTTCGCCGGCGTGGACTGGGCGCTCATACGGTGCGTGGCGCCGCCGGTGGTGCCCGACAAGGACTCGGCGGCCGCCG
GCGCCGGCGACAAGAAGGCGAAGCTGGGGAGCTGGAACAGCATGGGAGGCAAGAAGCGCAGCAGCTTCGGGAGGAAATCG
AATTACGAGGAAAGGCAGGGGGTTTTCCGCAAACTGATGAGCTGGAGTCAAGACAGCCGATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis