Browse Element(s) Details


OsAffx.9107.1.S1_x_at

Description gb:NM_192910.1
DB_XREF= gi:34912903
GEN=P0006C01.36
TID=OsAffx.9107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0006C01.36 (P0006C01.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g148202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14790OsAffx.12864.1.S1_at9/113+8020167..8025808Piwi domain containing protein, expressed
LOC_Os03g14800Os.8513.1.S1_at11/113+8026042..8031600aminotransferase, classes I and II family protein, expressed
LOC_Os03g14810OsAffx.12865.1.S1_at11/113+8040348..8040941myb family transcription factor, putative
LOC_Os03g14820OsAffx.25090.1.S1_at11/113+8043566..8044306hypothetical protein
LOC_Os03g14820OsAffx.9107.1.S1_x_at2/113+8043566..8044306hypothetical protein
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9107.1.S1_x_at--857--8251Chr01:25411085..25411109 (25 bp)
GGCACCAGCCACACGCGGGCAGCGA
NONE
OsAffx.9107.1.S1_x_at--866--1831Chr01:25411073..25411097 (25 bp)
ACGCGGGCAGCGAGCCGGTGACGGC
NONE
OsAffx.9107.1.S1_x_at--22--4371Chr01:25411023..25411047 (25 bp)
CCACGCGTGGACAGCGGAAGCAGCA
NONE
OsAffx.9107.1.S1_x_at--1002--2131Chr01:25411013..25411037 (25 bp)
ACAGCGGAAGCAGCAGCCATGCGCG
NONE
OsAffx.9107.1.S1_x_at--833--8391Chr01:25410943..25410967 (25 bp)
GGCGCAGCCATCTGCGTCGGCGTCA
NONE
OsAffx.9107.1.S1_x_at--786--1671Chr01:25410938..25410962 (25 bp)
AGCCATCTGCGTCGGCGTCAGCGAC
NONE
OsAffx.9107.1.S1_x_at--452--7111Chr01:25410922..25410946 (25 bp)
GTCAGCGACGCATCCGCGACGGCGA
NONE
OsAffx.9107.1.S1_x_at--1024--5791Chr01:25410916..25410940 (25 bp)
GACGCATCCGCGACGGCGACGGCAA
NONE
OsAffx.9107.1.S1_x_at--350--5752Chr03:8043709..8043733 (25 bp)
GACGGCAAGGGCTAGCATCGCATCC
LOC_Os03g14820
OsAffx.9107.1.S1_x_at--940--2872Chr03:8043715..8043738 (24 bp)
AAGGGCTAGCATCGCATCCACGGCG
LOC_Os03g14820
OsAffx.9107.1.S1_x_at--485--10071Chr01:25410857..25410881 (25 bp)
TAGGGAGGGCACATCCGTGGTGGCG
NONE
Target Sequence 
GGCACCAGCCACACGCGGGCAGCGAGCCGGTGACGGCGGCCCCGCGCGGGCGGCGACGGCGGCCACGCGTGGACAGCGGA
AGCAGCAGCCATGCGCGGGCGGCGTCGGCGGCCTCTTGCGGGCGGCGGCGTCGACGACCAGGGGCGCAGCCATCTGCGTC
GGCGTCAGCGACGCATCCGCGACGGCGACGGCAAGGGCTAGCATCGCATCCACGGCGGCGGCGGCGGCTAGGGAGGGCAC
ATCCGTGGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9107.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis