Browse Element(s) Details


OsAffx.25090.1.S1_at

Description tigr:9631.m01423
TID=OsAffx.25090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1482011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14790OsAffx.12864.1.S1_at9/113+8020167..8025808Piwi domain containing protein, expressed
LOC_Os03g14800Os.8513.1.S1_at11/113+8026042..8031600aminotransferase, classes I and II family protein, expressed
LOC_Os03g14810OsAffx.12865.1.S1_at11/113+8040348..8040941myb family transcription factor, putative
LOC_Os03g14820OsAffx.25090.1.S1_at11/113+8043566..8044306hypothetical protein
LOC_Os03g14820OsAffx.9107.1.S1_x_at2/113+8043566..8044306hypothetical protein
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25090.1.S1_at--143--1631Chr03:8043742..8043766 (25 bp)
AGCGGCCATGAAGGGCACATCCGCG
LOC_Os03g14820
OsAffx.25090.1.S1_at--3--8731Chr03:8043828..8043852 (25 bp)
TGTCTATCGTTGTCCCTCGTCAGCG
LOC_Os03g14820
OsAffx.25090.1.S1_at--478--9351Chr03:8043866..8043890 (25 bp)
TCGCTCGTCAATCATCAGTCGTCAG
LOC_Os03g14820
OsAffx.25090.1.S1_at--669--3071Chr03:8043875..8043899 (25 bp)
AATCATCAGTCGTCAGCCGGGTGGT
LOC_Os03g14820
OsAffx.25090.1.S1_at--169--7751Chr03:8043944..8043968 (25 bp)
GGTGATGGTATTCACCCGACCATCT
LOC_Os03g14820
OsAffx.25090.1.S1_at--933--6871Chr03:8043951..8043975 (25 bp)
GTATTCACCCGACCATCTCTGCGGG
LOC_Os03g14820
OsAffx.25090.1.S1_at--584--9251Chr03:8044052..8044076 (25 bp)
TCCTATTTCCTCAGCGCGCCATGGG
LOC_Os03g14820
OsAffx.25090.1.S1_at--96--2951Chr03:8044082..8044106 (25 bp)
AAGGCGGCCGCGAGATGCTCGTCCT
LOC_Os03g14820
OsAffx.25090.1.S1_at--809--10591Chr03:8044115..8044139 (25 bp)
TTCTCCTTTATCTATCCCTGGCAAG
LOC_Os03g14820
OsAffx.25090.1.S1_at--558--10351Chr03:8044121..8044145 (25 bp)
TTTATCTATCCCTGGCAAGTCCAGC
LOC_Os03g14820
OsAffx.25090.1.S1_at--409--3791Chr03:8044244..8044268 (25 bp)
CTCGTCGTGGCGACGATGAGGTTTC
LOC_Os03g14820
Target Sequence 
AGCGGCCATGAAGGGCACATCCGCGGTGGCGGCCAGGGAGGCGCATCCGCGGCGACAGCGGCAGCGATGCCCAGTCCCCA
GCCACCTGTCTATCGTTGTCCCTCGTCAGCGTCGCCTCGGCTCCTCGCTCGTCAATCATCAGTCGTCAGCCGGGTGGTGC
GGGGGCCCACTCACCCGCGGGTCCCCTGCGGGGGCGGGGACGGGTGATGGTATTCACCCGACCATCTCTGCGGGGCCGGG
GCCGGGGGAGAAGTCTGGGAGCGGTGGCGGGGGCGTTCTGGCCCAACCCGCCCCGTTGCCAACCCTACTCTCCTATTTCC
TCAGCGCGCCATGGGCCAACAAGGCGGCCGCGAGATGCTCGTCCTCATCCTCTTTCTCCTTTATCTATCCCTGGCAAGTC
CAGCCGCCCATCGCACTCCCGGACGGCGCGAGCCGGTCCGCCGCGGCATCGCCCCCGGTGTGTGCCGCCTCCTCCGTGGC
CCCAGGTGGCGGCAGCGATGGGCTCGTCGTGGCGACGATGAGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis