Browse Element(s) Details


Os.8513.1.S1_at

Description gb:AK067765.1
DB_XREF= gi:32977783
TID=Os.8513.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120O07, full insert sequence.
FL= gb:AK065537.1 gb:AK067765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1480011/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14750NANA3+7999917..8002929retrotransposon protein, putative, unclassified
LOC_Os03g14760NANA3+8003540..8006473transposon protein, putative, unclassified
LOC_Os03g14770NANA3+8006726..8009734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g14780NANA3+8012598..8012983hypothetical protein
LOC_Os03g14790OsAffx.12864.1.S1_at9/113+8020167..8025808Piwi domain containing protein, expressed
LOC_Os03g14800Os.8513.1.S1_at11/113+8026042..8031600aminotransferase, classes I and II family protein, expressed
LOC_Os03g14810OsAffx.12865.1.S1_at11/113+8040348..8040941myb family transcription factor, putative
LOC_Os03g14820OsAffx.25090.1.S1_at11/113+8043566..8044306hypothetical protein
LOC_Os03g14820OsAffx.9107.1.S1_x_at2/113+8043566..8044306hypothetical protein
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8513.1.S1_at--884--10251Chr03:8026589..8026613 (25 bp)
TTTGTAGGTTCCGATGATTCCCGTT
LOC_Os03g14800
Os.8513.1.S1_at--1128--10691Chr03:8026566..8026590 (25 bp)
TTGCCGCTCATACTTGCAAACACTT
LOC_Os03g14800
Os.8513.1.S1_at--938--10151Chr03:8026501..8026525 (25 bp)
TATCGTTCGGTCTTCTGGTAGTGGT
LOC_Os03g14800
Os.8513.1.S1_at--79--7271Chr03:8026442..8026466 (25 bp)
GTCCTCTATTCATCACTTTTATCAT
LOC_Os03g14800
Os.8513.1.S1_at--30--11Chr03:8026341..8026365 (25 bp)
AGACCCCAAATTCTCAAATCGGCAC
LOC_Os03g14800
Os.8513.1.S1_at--799--2251Chr03:8026326..8026350 (25 bp)
AAATCGGCACAAATCGTTTCCAGGT
LOC_Os03g14800
Os.8513.1.S1_at--823--6831Chr03:8026311..8026335 (25 bp)
GTTTCCAGGTTTCATCTTACCCAAT
LOC_Os03g14800
Os.8513.1.S1_at--353--5132Chr11:19678298..19678317 (20 bp)
GCAAATCCAACCTGAGCAGCCATAT
NONE
Os.8513.1.S1_at--777--2551Chr03:8026243..8026267 (25 bp)
AACTGAAAGCGCTGCCTATCGAACA
LOC_Os03g14800
Os.8513.1.S1_at--868--5991Chr03:8026209..8026233 (25 bp)
GAGACGATGGATTTGTGCCGGACAA
LOC_Os03g14800
Os.8513.1.S1_at--927--2591Chr03:8026171..8026195 (25 bp)
AACGCGTCCATGTTCAGCACAAAAA
LOC_Os03g14800
Target Sequence 
TTTGTAGGTTCCGATGATTCCCGTTGCCGCTCATACTTGCAAACACTTCGAAAAATAGACGTAGAACAGTGAAATTAGGT
GTGNTATGTATCGTTCGGTCTTCTGGTAGTGGTTTCCCGGTAGNATTCNTTCTATATCTTTAATTTTGTCCTCTATTCAT
CACTTTTATCATTTTGGCTTCAATTCATCACTTTCTGGTGGATTTATATTCTTTTTTTTAGTGTAGATTGGTTGCGCAAA
TGGCGAAAAGACCCCAAATTCTCAAATCGGCACAAATCGTTTCCAGGTTTCATCTTACCCAATCGCTCCTTCCTTGCAAA
TCCAACCTGAGCAGCCATATTAACCAAACTGAAAGCGCTGCCTATCGAACACCACAGGCGGAGACGATGGATTTGTGCCG
GACAACCGGAGCACGTGCAACGCGTCCATGTTCAGCACAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis