Browse Element(s) Details


Os.49994.1.S1_at

Description gb:AK061138.1
DB_XREF= gi:32971156
TID=Os.49994.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-B07, full insert sequence.
FL= gb:AK119506.1 gb:AK061138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49994.1.S1_at--405--4571Chr03:8086648..8086672 (25 bp)
GCGCTCCGGTGGTCGCAGTTTTCCG
LOC_Os03g14880
Os.49994.1.S1_at--185--3231Chr03:8086547..8086571 (25 bp)
CAAGACGGCGCTGGCGATCATCTTC
LOC_Os03g14880
Os.49994.1.S1_at--92--8231Chr03:8086321..8086345 (25 bp)
GGCAAGGTCTACAGATTCTTGGCAT
LOC_Os03g14880
Os.49994.1.S1_at--770--2131Chr03:8086311..8086335 (25 bp)
ACAGATTCTTGGCATGGTTGGAGAC
LOC_Os03g14880
Os.49994.1.S1_at--832--8571Chr03:8086297..8086321 (25 bp)
TGGTTGGAGACGAGACAATCTCAAT
LOC_Os03g14880
Os.49994.1.S1_at--339--451Chr03:8086280..8086304 (25 bp)
ATCTCAATGGAAATCAAGCCTCTGC
LOC_Os03g14880
Os.49994.1.S1_at--860--2651Chr03:8086265..8086289 (25 bp)
AAGCCTCTGCCATAGCGCTGTATGA
LOC_Os03g14880
Os.49994.1.S1_at--74--3831Chr03:8086259..8086283 (25 bp)
CTGCCATAGCGCTGTATGATACTAC
LOC_Os03g14880
Os.49994.1.S1_at--1071--8151Chr03:8086198..8086222 (25 bp)
GGAAACCATTTCTTAGCTCACCTTT
LOC_Os03g14880
Os.49994.1.S1_at--364--10011Chr03:8086185..8086209 (25 bp)
TAGCTCACCTTTTGTTCATTTGTAC
LOC_Os03g14880
Os.49994.1.S1_at--737--6551Chr03:8086157..8086181 (25 bp)
GATTCACACAATGAGAAAACCACAG
LOC_Os03g14880
Target Sequence 
GCGCTCCGGTGGTCGCAGTTTTCCGGCGAGTGCGCGACCTGCCTCTGCCGCATGGAGCCCCTCGTCGTCGGCGGCACGGC
GGTGCGGTACCGCGGCCTCTCCAAGACGGCGCTGGCGATCATCTTCGCGCTGTGCTCGCGGATGGTGTGCCNGATTTACG
GCGAGGAGCGGCTCAGCGCGTGGACGCGGTCGGCGCTGGAGGCCGCCGGCTGGGTGTTCGTGGCGGCCGACGCCGTCTAC
CTCGTCGGCTGGGTCGCCATCGAGGGCGGCGCCGTCGCCGTGCTGGCGTACAGCCTCGTCGCCGGCCTCGTCTTCCTCAG
CGTCTTCGGCAAGGTCTACAGATTCTTGGCATGGTTGGAGACGAGACAATCTCAATGGAAATCAAGCCTCTGCCATAGCG
CTGTATGATACTACTACTCGTCAGAAAAAAAAAATCTGTAAAAAGAAAAAGGAAACCATTTCTTAGCTCACCTTTTGTTC
ATTTGTACAATGATTCACACAATGAGAAAACCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis